Subcellular Localization
min:
: max
Winner_takes_all: extracellular, plasma membrane
Predictor Summary:
Predictor Summary:
- extracellular 6
- golgi 5
- plasma membrane 7
- endoplasmic reticulum 5
- vacuole 5
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr1P20960_001 | Banana | endoplasmic reticulum, plasma membrane | 72.12 | 79.79 |
| VIT_01s0011g03560.t01 | Wine grape | extracellular | 64.9 | 71.05 |
| Os09t0281300-02 | Rice | endoplasmic reticulum, plasma membrane | 62.98 | 68.95 |
| TraesCS7B01G249300.1 | Wheat | extracellular | 62.5 | 68.06 |
| TraesCS7D01G345300.1 | Wheat | extracellular | 62.02 | 67.54 |
| TraesCS7A01G338100.1 | Wheat | extracellular | 62.02 | 67.54 |
| EER88397 | Sorghum | endoplasmic reticulum, plasma membrane, vacuole | 61.54 | 67.37 |
| HORVU7Hr1G083180.1 | Barley | extracellular | 61.54 | 67.02 |
| KRH75370 | Soybean | extracellular | 60.1 | 65.44 |
| KRH45268 | Soybean | extracellular | 59.62 | 64.92 |
| Solyc05g009330.2.1 | Tomato | plasma membrane | 57.21 | 62.63 |
| PGSC0003DMT400037709 | Potato | plasma membrane | 56.73 | 62.11 |
| Bra019828.1-P | Field mustard | endoplasmic reticulum, extracellular, plasma membrane | 56.25 | 61.9 |
| CDX97989 | Canola | endoplasmic reticulum, extracellular, plasma membrane | 56.25 | 61.9 |
| AT1G13380.1 | Thale cress | endoplasmic reticulum, plasma membrane, vacuole | 55.29 | 61.17 |
| Zm00001d037463_P001 | Maize | plasma membrane | 62.5 | 54.17 |
| GSMUA_Achr4P29970_001 | Banana | endoplasmic reticulum, plasma membrane, vacuole | 42.79 | 47.85 |
| CDY19370 | Canola | plasma membrane, plastid | 56.25 | 47.37 |
| GSMUA_Achr5P12000_001 | Banana | endoplasmic reticulum, plasma membrane, vacuole | 41.83 | 47.28 |
| GSMUA_Achr8P13790_001 | Banana | endoplasmic reticulum, plasma membrane, vacuole | 37.98 | 43.17 |
| GSMUA_Achr1P21230_001 | Banana | golgi, plasma membrane, vacuole | 34.13 | 27.63 |
| GSMUA_Achr1P00070_001 | Banana | plasma membrane | 41.83 | 18.95 |
Protein Annotations
| EnsemblPlants:GSMUA_Achr11P13240_001 | EnsemblPlants:GSMUA_Achr11T13240_001 | EnsemblPlantsGene:GSMUA_Achr11G13240_001 | GO:GO:0005575 | GO:GO:0016020 | GO:GO:0016021 |
| InterPro:DUF1218 | PANTHER:PTHR31769 | PANTHER:PTHR31769:SF5 | PFAM:PF06749 | PFscan:PS51257 | SEG:seg |
| TMHMM:TMhelix | UniParc:UPI000294B934 | UniProt:M0RRV4 | MapMan:35.2 | : | : |
Description
fiber protein Fb34, putative, expressed [Source:GMGC_GENE;Acc:GSMUA_Achr11G13240_001]
Coordinates
chr11:-:13404232..13405091
Molecular Weight (calculated)
23238.3 Da
IEP (calculated)
9.249
GRAVY (calculated)
0.384
Length
208 amino acids
Sequence
(BLAST)
(BLAST)
001: MLSLRICNTW LLFGFEFYTV DFVISYLLLY GCHPQHSVQV ANSIWKHVPV YSKGTIVTDI RNATYCVYDS DVATGYGVGA FLFLLSSQSL IMGVTKCMCF
101: GKPLAPGGNR AWSIIYFASS WLTFLIAEAC LTAGATKNAY HTKYRHMVYA QNWTCESLRK GVFIAGAVFV VFTMILNVYY YMYFAKATSQ SARKTNKASS
201: TVGMASYA
101: GKPLAPGGNR AWSIIYFASS WLTFLIAEAC LTAGATKNAY HTKYRHMVYA QNWTCESLRK GVFIAGAVFV VFTMILNVYY YMYFAKATSQ SARKTNKASS
201: TVGMASYA
001: MGEGKASTLV FILVVALSLV AFGFSIAAER RRSIGKSIQD PITNTTFCVY DSDVATGYGV GAFLFLLSSE SLLMSVTKCM CFGRPLAPGS DRAWSIIYFI
101: SSWMTFLVAE ACVIAGATKN AYHTKYLSSQ TFSCASLRKG IFIAGAVFIV ATMVLNVYYY MYFTKSVSSP PAHKANRSSS NIGMAGYA
101: SSWMTFLVAE ACVIAGATKN AYHTKYLSSQ TFSCASLRKG IFIAGAVFIV ATMVLNVYYY MYFTKSVSSP PAHKANRSSS NIGMAGYA
Arabidopsis Description
Expressed protein [Source:UniProtKB/TrEMBL;Acc:Q9FX59]
SUBAcon: [plasma membrane,endoplasmic reticulum,vacuole]
SUBAcon: [plasma membrane,endoplasmic reticulum,vacuole]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.