Subcellular Localization
min:
: max
Winner_takes_all: endoplasmic reticulum, plasma membrane
Predictor Summary:
Predictor Summary:
- extracellular 5
- endoplasmic reticulum 6
- vacuole 5
- plasma membrane 7
- golgi 5
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Os09t0281300-02 | Rice | endoplasmic reticulum, plasma membrane | 80.85 | 80.0 |
| VIT_01s0011g03560.t01 | Wine grape | extracellular | 79.79 | 78.95 |
| TraesCS7B01G249300.1 | Wheat | extracellular | 79.26 | 78.01 |
| TraesCS7D01G345300.1 | Wheat | extracellular | 78.72 | 77.49 |
| TraesCS7A01G338100.1 | Wheat | extracellular | 78.72 | 77.49 |
| HORVU7Hr1G083180.1 | Barley | extracellular | 78.19 | 76.96 |
| EER88397 | Sorghum | endoplasmic reticulum, plasma membrane, vacuole | 77.66 | 76.84 |
| KRH45268 | Soybean | extracellular | 75.53 | 74.35 |
| KRH75370 | Soybean | extracellular | 75.0 | 73.82 |
| GSMUA_Achr11P... | Banana | extracellular, plasma membrane | 79.79 | 72.12 |
| Solyc05g009330.2.1 | Tomato | plasma membrane | 72.87 | 72.11 |
| Bra019828.1-P | Field mustard | endoplasmic reticulum, extracellular, plasma membrane | 72.34 | 71.96 |
| CDX97989 | Canola | endoplasmic reticulum, extracellular, plasma membrane | 72.34 | 71.96 |
| AT1G13380.1 | Thale cress | endoplasmic reticulum, plasma membrane, vacuole | 71.28 | 71.28 |
| PGSC0003DMT400037709 | Potato | plasma membrane | 71.81 | 71.05 |
| Zm00001d037463_P001 | Maize | plasma membrane | 78.19 | 61.25 |
| CDY19370 | Canola | plasma membrane, plastid | 72.87 | 55.47 |
| GSMUA_Achr4P29970_001 | Banana | endoplasmic reticulum, plasma membrane, vacuole | 53.19 | 53.76 |
| GSMUA_Achr5P12000_001 | Banana | endoplasmic reticulum, plasma membrane, vacuole | 51.06 | 52.17 |
| GSMUA_Achr8P13790_001 | Banana | endoplasmic reticulum, plasma membrane, vacuole | 45.21 | 46.45 |
| GSMUA_Achr1P21230_001 | Banana | golgi, plasma membrane, vacuole | 43.09 | 31.52 |
| GSMUA_Achr1P00070_001 | Banana | plasma membrane | 52.13 | 21.35 |
Protein Annotations
| EnsemblPlants:GSMUA_Achr1P20960_001 | EnsemblPlants:GSMUA_Achr1T20960_001 | EnsemblPlantsGene:GSMUA_Achr1G20960_001 | GO:GO:0005575 | GO:GO:0016020 | GO:GO:0016021 |
| InterPro:DUF1218 | PANTHER:PTHR31769 | PANTHER:PTHR31769:SF5 | PFAM:PF06749 | SEG:seg | TMHMM:TMhelix |
| UniParc:UPI0002949387 | UniProt:M0S1Q4 | MapMan:35.2 | : | : | : |
Description
fiber protein Fb34, putative, expressed [Source:GMGC_GENE;Acc:GSMUA_Achr1G20960_001]
Coordinates
chr1:+:15780664..15784711
Molecular Weight (calculated)
20530.0 Da
IEP (calculated)
9.306
GRAVY (calculated)
0.351
Length
188 amino acids
Sequence
(BLAST)
(BLAST)
001: MEEKGSTLVQ ILAVALCLTA FGFAIAAERR RSTGTIETDK FNATYCVYDS DVATGYGVGA FLFLLSSQSL LMGVTKCMCF GKPLAPGGNR AWSIIYFASS
101: WLTFLIAEAC LIAGATKNAY HTKYRHVVYA QNWTCESLRK GVFIAGAVFV VFTMILNVYY YMYFAKATGQ AARKTNKPNP TVGMAGYA
101: WLTFLIAEAC LIAGATKNAY HTKYRHVVYA QNWTCESLRK GVFIAGAVFV VFTMILNVYY YMYFAKATGQ AARKTNKPNP TVGMAGYA
001: MGEGKASTLV FILVVALSLV AFGFSIAAER RRSIGKSIQD PITNTTFCVY DSDVATGYGV GAFLFLLSSE SLLMSVTKCM CFGRPLAPGS DRAWSIIYFI
101: SSWMTFLVAE ACVIAGATKN AYHTKYLSSQ TFSCASLRKG IFIAGAVFIV ATMVLNVYYY MYFTKSVSSP PAHKANRSSS NIGMAGYA
101: SSWMTFLVAE ACVIAGATKN AYHTKYLSSQ TFSCASLRKG IFIAGAVFIV ATMVLNVYYY MYFTKSVSSP PAHKANRSSS NIGMAGYA
Arabidopsis Description
Expressed protein [Source:UniProtKB/TrEMBL;Acc:Q9FX59]
SUBAcon: [endoplasmic reticulum,vacuole,plasma membrane]
SUBAcon: [endoplasmic reticulum,vacuole,plasma membrane]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.