Subcellular Localization
min:
: max
Winner_takes_all: endoplasmic reticulum, vacuole, plasma membrane
Predictor Summary:
Predictor Summary:
- extracellular 5
- endoplasmic reticulum 6
- vacuole 6
- plasma membrane 7
- golgi 5
- peroxisome 1
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr4P29970_001 | Banana | endoplasmic reticulum, plasma membrane, vacuole | 62.3 | 61.29 |
| GSMUA_Achr5P12000_001 | Banana | endoplasmic reticulum, plasma membrane, vacuole | 59.02 | 58.7 |
| Os10t0495900-01 | Rice | endoplasmic reticulum, plasma membrane, vacuole | 52.46 | 52.46 |
| TraesCS1D01G171800.1 | Wheat | endoplasmic reticulum, plasma membrane, vacuole | 50.82 | 50.82 |
| TraesCS1A01G171400.1 | Wheat | endoplasmic reticulum, plasma membrane, vacuole | 50.27 | 50.27 |
| TraesCS1B01G185600.1 | Wheat | endoplasmic reticulum, plasma membrane, vacuole | 50.27 | 50.27 |
| EER94009 | Sorghum | endoplasmic reticulum, plasma membrane | 47.54 | 46.28 |
| GSMUA_Achr1P20960_001 | Banana | endoplasmic reticulum, plasma membrane | 46.45 | 45.21 |
| GSMUA_Achr11P... | Banana | extracellular, plasma membrane | 43.17 | 37.98 |
| GSMUA_Achr1P21230_001 | Banana | golgi, plasma membrane, vacuole | 46.45 | 33.07 |
| GSMUA_Achr1P00070_001 | Banana | plasma membrane | 62.3 | 24.84 |
Protein Annotations
| EnsemblPlants:GSMUA_Achr8P13790_001 | EnsemblPlants:GSMUA_Achr8T13790_001 | EnsemblPlantsGene:GSMUA_Achr8G13790_001 | GO:GO:0005575 | GO:GO:0016020 | GO:GO:0016021 |
| InterPro:DUF1218 | PANTHER:PTHR31769 | PANTHER:PTHR31769:SF39 | PFAM:PF06749 | SEG:seg | TMHMM:TMhelix |
| UniParc:UPI000295C979 | UniProt:M0TQ82 | MapMan:35.2 | : | : | : |
Description
fiber protein Fb34, putative, expressed [Source:GMGC_GENE;Acc:GSMUA_Achr8G13790_001]
Coordinates
chr8:+:10561076..10561780
Molecular Weight (calculated)
20076.5 Da
IEP (calculated)
8.186
GRAVY (calculated)
0.615
Length
183 amino acids
Sequence
(BLAST)
(BLAST)
001: MDSKVVIAFV LVFDVVAFAL AIAAEQRRNT AQVVPDSEKE YTYCVYDSDI ATGFGVGSLL LLLLSQLIIT AVTRCYCCGP SLRRGGSRFC VFLLLLSCWL
101: TFLVAEACLL AGSVQNARHT RYRGFYFMND PSCEVLRKGV FAAGAAFVAL TAILSVFYYL LYAKGRDSSY RIAESAIGMN SFS
101: TFLVAEACLL AGSVQNARHT RYRGFYFMND PSCEVLRKGV FAAGAAFVAL TAILSVFYYL LYAKGRDSSY RIAESAIGMN SFS
001: MASKLVIIIV FILDLIAVGL AIAAEQRRSV GKVVPDGEKE FEHCEYGSDI ATSYGAGAFV LLFISQVIIM VASRCFCCGK ALKPGGSRAC GIMLFLICWV
101: FFLIAEVCLL AGSIRNAYHT TYRRMWNIEN PPSCEVIRKG VFAAGASFAL FTAIVSQFYY ISYSRARDGY QTPHY
101: FFLIAEVCLL AGSIRNAYHT TYRRMWNIEN PPSCEVIRKG VFAAGASFAL FTAIVSQFYY ISYSRARDGY QTPHY
Arabidopsis Description
At1g52910 [Source:UniProtKB/TrEMBL;Acc:Q9C930]
SUBAcon: [endoplasmic reticulum,extracellular,vacuole]
SUBAcon: [endoplasmic reticulum,extracellular,vacuole]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.