Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane, endoplasmic reticulum, vacuole
Predictor Summary:
Predictor Summary:
- extracellular 6
- golgi 6
- plasma membrane 7
- endoplasmic reticulum 7
- vacuole 7
- nucleus 1
- cytosol 1
- unclear 1
- peroxisome 1
- mitochondrion 1
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS1D01G171800.1 | Wheat | endoplasmic reticulum, plasma membrane, vacuole | 82.51 | 82.51 |
| TraesCS1A01G171400.1 | Wheat | endoplasmic reticulum, plasma membrane, vacuole | 81.97 | 81.97 |
| TraesCS1B01G185600.1 | Wheat | endoplasmic reticulum, plasma membrane, vacuole | 81.97 | 81.97 |
| EER94009 | Sorghum | endoplasmic reticulum, plasma membrane | 79.23 | 77.13 |
| Os07t0462200-01 | Rice | plasma membrane | 55.74 | 55.14 |
| GSMUA_Achr8P13790_001 | Banana | endoplasmic reticulum, plasma membrane, vacuole | 52.46 | 52.46 |
| Os04t0678200-01 | Rice | plasma membrane | 46.45 | 46.45 |
| Os09t0281300-02 | Rice | endoplasmic reticulum, plasma membrane | 42.62 | 41.05 |
| Os08t0261100-01 | Rice | endoplasmic reticulum, extracellular, plasma membrane | 36.61 | 33.67 |
Protein Annotations
| MapMan:35.2 | EntrezGene:4349002 | ProteinID:AAN05376.1 | ProteinID:ABG66165.1 | ProteinID:BAT11478.1 | InterPro:DUF1218 |
| ProteinID:EAZ16552.1 | GO:GO:0005575 | GO:GO:0016020 | GO:GO:0016021 | EnsemblPlantsGene:Os10g0495900 | EnsemblPlants:Os10t0495900-01 |
| PFAM:PF06749 | PANTHER:PTHR31769 | PANTHER:PTHR31769:SF12 | UniProt:Q8H8J9 | TMHMM:TMhelix | UniParc:UPI00000AD19F |
| RefSeq:XP_015614314.1 | SEG:seg | : | : | : | : |
Description
Protein of unknown function DUF1218 family protein. (Os10t0495900-01)
Coordinates
chr10:+:18869929..18872891
Molecular Weight (calculated)
19636.8 Da
IEP (calculated)
8.558
GRAVY (calculated)
0.483
Length
183 amino acids
Sequence
(BLAST)
(BLAST)
001: MADSTRVLAV ILVVDVVAFG LAIAAEQSRP SARVETDARQ EWTYCVYRPD AATGLGAAAL ALLLIGQAVA AVSSRCFCCG AALRPGGARA CALILFLSSW
101: LTFLIAESCL LAGLVQSAYH TRYRKVFFEN PPDCETVRRG TFGAGAAFSL ITCVLTGAYY FYFSKSRVSY ARREATIGMS PYS
101: LTFLIAESCL LAGLVQSAYH TRYRKVFFEN PPDCETVRRG TFGAGAAFSL ITCVLTGAYY FYFSKSRVSY ARREATIGMS PYS
001: MASKIVSAIV FVFNLIAFGL AVAAEQRRST ARVVQDTEVQ YNYCVYDSDR ATGYGVGAFL FSVASQILIM LVSRCFCCGK PLKPGGSRAL ALILFIVSWM
101: FFLIAEICLL AGSVENAYHT KYRTMFMDNP PDCQTLRKGV FAAGASFVFF NAIVSQFYYF FYFSAAEASL SPY
101: FFLIAEICLL AGSVENAYHT KYRTMFMDNP PDCQTLRKGV FAAGASFVFF NAIVSQFYYF FYFSAAEASL SPY
Arabidopsis Description
At4g27438 [Source:UniProtKB/TrEMBL;Acc:Q940M6]
SUBAcon: [plasma membrane,endoplasmic reticulum,vacuole]
SUBAcon: [plasma membrane,endoplasmic reticulum,vacuole]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.