Factsheet for GSMUA_Achr1P00070_001

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

extracellular 5
endoplasmic reticulum 6
vacuole 5
plasma membrane 7
golgi 5
nucleus 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	nucleus, secretory
BaCelLo:	secretory
EpiLoc:	nucleus
iPSORT:	secretory
MultiLoc:	endoplasmic reticulum
Plant-mPloc:	nucleus
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plasma membrane
YLoc:	plasma membrane

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr5P12000_001	Banana	endoplasmic reticulum, plasma membrane, vacuole	35.29	88.04
GSMUA_Achr4P29970_001	Banana	endoplasmic reticulum, plasma membrane, vacuole	33.55	82.8
Os07t0462200-01	Rice	plasma membrane	27.89	69.19
Zm00001d019597_P001	Maize	plasma membrane	26.36	66.48
EER98474	Sorghum	endoplasmic reticulum, plasma membrane, vacuole	26.58	65.95
Zm00001d005394_P001	Maize	endoplasmic reticulum, extracellular, vacuole	26.58	65.95
TraesCS3A01G415300.1	Wheat	endoplasmic reticulum, extracellular, vacuole	25.93	63.64
HORVU3Hr1G092420.1	Barley	endoplasmic reticulum, extracellular, vacuole	25.49	63.24
TraesCS3B01G450500.1	Wheat	nucleus	25.49	63.24
HORVU3Hr1G009130.2	Barley	cytosol, extracellular	11.98	63.22
TraesCS3D01G411100.1	Wheat	endoplasmic reticulum, extracellular, vacuole	25.49	62.57
GSMUA_Achr8P13790_001	Banana	endoplasmic reticulum, plasma membrane, vacuole	24.84	62.3
HORVU2Hr1G083540.5	Barley	endoplasmic reticulum, extracellular, vacuole	13.94	54.24
OQU91983	Sorghum	extracellular	9.59	53.66
GSMUA_Achr1P20960_001	Banana	endoplasmic reticulum, plasma membrane	21.35	52.13
HORVU6Hr1G041520.3	Barley	endoplasmic reticulum, extracellular	13.29	49.59
HORVU7Hr1G051440.1	Barley	extracellular	9.8	48.39
GSMUA_Achr11P...	Banana	extracellular, plasma membrane	18.95	41.83
HORVU4Hr1G054230.1	Barley	extracellular	10.68	40.83
GSMUA_Achr1P21230_001	Banana	golgi, plasma membrane, vacuole	20.04	35.8

Protein Annotations

MapMan:15.5.7.2	Gene3D:3.30.730.10	InterPro:AP2/ERF_dom	InterPro:AP2/ERF_dom_sf	InterPro:DNA-bd_dom_sf	InterPro:DUF1218
GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0016020	GO:GO:0016021
EnsemblPlantsGene:GSMUA_Achr1G00070_001	EnsemblPlants:GSMUA_Achr1P00070_001	EnsemblPlants:GSMUA_Achr1T00070_001	InterPro:IPR001471	InterPro:IPR036955	UniProt:M0RVR5
PFAM:PF00847	PFAM:PF06749	PRINTS:PR00367	PFscan:PS51032	PANTHER:PTHR31657	PANTHER:PTHR31657:SF19
SMART:SM00380	SUPFAM:SSF54171	SignalP:SignalP-TM	TMHMM:TMhelix	UniParc:UPI000296CF87	SEG:seg

Description

fiber protein Fb34, putative, expressed [Source:GMGC_GENE;Acc:GSMUA_Achr1G00070_001]

Coordinates

chr1:+:48300..54150

Molecular Weight (calculated)

49968.1 Da

IEP (calculated)

6.715

GRAVY (calculated)

-0.122

Length

459 amino acids

Sequence
(BLAST)

001: MASKLVLALV FVFDVIAFAL AVAAEQRRST AKVVTDSENT YNYCVYDSDI ATGYGVGALL FLLLSQAVLM VVSKCFCFGR SLGPGGPRAC ALLFFLLSWL
101: TFVIAEACLL AGSVRNAHHT RYRNMFFDGN LSCETVRKGV FAAGAAFVFF TAILSELYYV TYAKAAGDSI IPSYQERLLK HWSEALNLSP RGNLAMMSHL
201: ARRRSLASLY PGIFQSFMLP PPPAPAKLYR GVRQRHWGKW VAEIRLPKNR TRLWLGTFDT AEAAALAYDR EAFKLRGENA RLNFPNLFLG KGGGGGSRDG
301: ASFSSSSSSA PATPEEAKQH QQDESRQPSQ LESRFNTPPA TAETTVDGGM SSVADSPSGI HEPANLGAMV TTPQPTEMVW GDADEAWFST WGPGSSVWDD
401: VDGANSLLLQ SRLTTIPESD MDYSDPTASA TTKAYQDTDT PASPSSAPPH PPSWFMWKE

Best Arabidopsis Sequence Match ( AT4G27435.1 )
(BLAST)

001: MASKIVSAIV FVFNLIAFGL AVAAEQRRST ARVVQDTEVQ YNYCVYDSDR ATGYGVGAFL FSVASQILIM LVSRCFCCGK PLKPGGSRAL ALILFIVSWM
101: FFLIAEICLL AGSVENAYHT KYRTMFMDNP PDCQTLRKGV FAAGASFVFF NAIVSQFYYF FYFSAAEASL SPY

Arabidopsis Description

At4g27438 [Source:UniProtKB/TrEMBL;Acc:Q940M6]
SUBAcon: [endoplasmic reticulum,vacuole,plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.