Factsheet for Zm00001d005394_P001

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum, extracellular, vacuole

Predictor Summary:

extracellular 5
endoplasmic reticulum 5
vacuole 5
plasma membrane 4
golgi 4

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum, extracellular, vacuole
Any Predictor:	secretory
iPSORT:	secretory
MultiLoc:	endoplasmic reticulum
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	vacuole
YLoc:	extracellular

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EER98474	Sorghum	endoplasmic reticulum, plasma membrane, vacuole	98.38	98.38
Zm00001d019597_P001	Maize	plasma membrane	96.22	97.8
TraesCS3B01G450500.1	Wheat	nucleus	85.95	85.95
Os07t0462200-01	Rice	plasma membrane	85.41	85.41
HORVU3Hr1G009130.2	Barley	cytosol, extracellular	40.0	85.06
HORVU3Hr1G092420.1	Barley	endoplasmic reticulum, extracellular, vacuole	84.86	84.86
TraesCS3D01G411100.1	Wheat	endoplasmic reticulum, extracellular, vacuole	84.86	83.96
TraesCS3A01G415300.1	Wheat	endoplasmic reticulum, extracellular, vacuole	84.86	83.96
HORVU2Hr1G083540.5	Barley	endoplasmic reticulum, extracellular, vacuole	48.11	75.42
OQU91983	Sorghum	extracellular	32.43	73.17
HORVU6Hr1G041520.3	Barley	endoplasmic reticulum, extracellular	44.86	67.48
HORVU7Hr1G051440.1	Barley	extracellular	33.51	66.67
GSMUA_Achr5P12000_001	Banana	endoplasmic reticulum, plasma membrane, vacuole	65.41	65.76
GSMUA_Achr4P29970_001	Banana	endoplasmic reticulum, plasma membrane, vacuole	65.95	65.59
Zm00001d026625_P001	Maize	endoplasmic reticulum, plasma membrane, vacuole	56.22	55.62
HORVU4Hr1G054230.1	Barley	extracellular	35.14	54.17
Zm00001d050182_P001	Maize	plasma membrane	42.7	39.7
Zm00001d024066_P001	Maize	plasma membrane	42.16	39.2
Zm00001d037463_P001	Maize	plasma membrane	47.57	36.67
GSMUA_Achr1P00070_001	Banana	plasma membrane	65.95	26.58

Protein Annotations

EnsemblPlants:Zm00001d005394_P001	EnsemblPlants:Zm00001d005394_T001	EnsemblPlantsGene:Zm00001d005394	EntrezGene:100502065	GO:GO:0005575	GO:GO:0016020
GO:GO:0016021	InterPro:DUF1218	PANTHER:PTHR31769	PANTHER:PTHR31769:SF39	PFAM:PF06749	ProteinID:ONM21000.1
SEG:seg	SignalP:SignalP-TM	TMHMM:TMhelix	UniParc:UPI00018C71B4	UniProt:A0A1D6EMA4	MapMan:35.2

Description

Fiber protein Fb34

Coordinates

chr2:+:172200289..172201842

Molecular Weight (calculated)

19525.7 Da

IEP (calculated)

8.252

GRAVY (calculated)

0.589

Length

185 amino acids

Sequence
(BLAST)

001: MASIIVQAVV ILLDVIAFGL GVAAEQRRSR ATVTPDAAKE YDYCVYDSDI ATGYGVGALL LLAAAQVVLM VASRCFCCGR GLKPGGSRAC ALILFLFTWV
101: AFLIAEACLL AGSVRNAYHT RYRGIFYGDS LSCETVRKGV FAAGAAFTFF TAILGEVYYL SYSKSRDAAG GAPYGGSSIG MGPYN

Best Arabidopsis Sequence Match ( AT3G15480.1 )
(BLAST)

001: MASKLVVIIV FILDLIAVGL AIAAEQRRSV GKVETDRDKQ YDYCVYGTDI ATSYGAGAFV LLFVSQVLIM AASRCFCCGK SLNPGGSRAC AIILFLICWV
101: FFLIAEMCLL AASIRNAYHT QYRKMWKVED PPSCEVIRKG VFAAGAAFTL FTAIVSQFYY VCYSRARDAY QNPSY

Arabidopsis Description

AT3g15480/MJK13_14 [Source:UniProtKB/TrEMBL;Acc:Q9LDK1]
SUBAcon: [endoplasmic reticulum,extracellular,vacuole]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.