Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane
Predictor Summary:
Predictor Summary:
- extracellular 5
- endoplasmic reticulum 5
- vacuole 5
- plasma membrane 4
- golgi 4
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
plasma membrane:
27341663
|
msms PMID:
27341663
doi
Bond Life Sciences Center, University of Missouri, Columbia, MO, 65211, USA., Division of Biochemistry, University of Missouri, Columbia, MO, 65211, USA., Division of Plant Sciences, University of Missouri, Columbia, MO, 65211, USA., Interdisciplinary Plant Group, University of Missouri, Columbia, MO, 65211, USA.
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d005394_P001 | Maize | endoplasmic reticulum, extracellular, vacuole | 97.8 | 96.22 |
| EER98474 | Sorghum | endoplasmic reticulum, plasma membrane, vacuole | 97.25 | 95.68 |
| HORVU3Hr1G009130.2 | Barley | cytosol, extracellular | 41.21 | 86.21 |
| Os07t0462200-01 | Rice | plasma membrane | 86.81 | 85.41 |
| TraesCS3B01G450500.1 | Wheat | nucleus | 85.71 | 84.32 |
| HORVU3Hr1G092420.1 | Barley | endoplasmic reticulum, extracellular, vacuole | 84.62 | 83.24 |
| TraesCS3D01G411100.1 | Wheat | endoplasmic reticulum, extracellular, vacuole | 84.62 | 82.35 |
| TraesCS3A01G415300.1 | Wheat | endoplasmic reticulum, extracellular, vacuole | 84.62 | 82.35 |
| HORVU2Hr1G083540.5 | Barley | endoplasmic reticulum, extracellular, vacuole | 49.45 | 76.27 |
| OQU91983 | Sorghum | extracellular | 31.87 | 70.73 |
| HORVU6Hr1G041520.3 | Barley | endoplasmic reticulum, extracellular | 46.15 | 68.29 |
| HORVU7Hr1G051440.1 | Barley | extracellular | 34.62 | 67.74 |
| GSMUA_Achr5P12000_001 | Banana | endoplasmic reticulum, plasma membrane, vacuole | 65.38 | 64.67 |
| GSMUA_Achr4P29970_001 | Banana | endoplasmic reticulum, plasma membrane, vacuole | 65.93 | 64.52 |
| Zm00001d026625_P001 | Maize | endoplasmic reticulum, plasma membrane, vacuole | 57.14 | 55.62 |
| HORVU4Hr1G054230.1 | Barley | extracellular | 36.26 | 55.0 |
| Zm00001d050182_P001 | Maize | plasma membrane | 43.41 | 39.7 |
| Zm00001d024066_P001 | Maize | plasma membrane | 42.31 | 38.69 |
| Zm00001d037463_P001 | Maize | plasma membrane | 49.45 | 37.5 |
| GSMUA_Achr1P00070_001 | Banana | plasma membrane | 66.48 | 26.36 |
Protein Annotations
| EMBL:EU959427 | EnsemblPlants:Zm00001d019597_P001 | EnsemblPlants:Zm00001d019597_T001 | EnsemblPlantsGene:Zm00001d019597 | EntrezGene:100286200 | GO:GO:0005575 |
| GO:GO:0016020 | GO:GO:0016021 | InterPro:DUF1218 | PANTHER:PTHR31769 | PANTHER:PTHR31769:SF39 | PFAM:PF06749 |
| ProteinID:ONM53386.1 | SEG:seg | SignalP:SignalP-TM | TMHMM:TMhelix | UniParc:UPI000182CE57 | UniProt:B6T362 |
| MapMan:35.2 | : | : | : | : | : |
Description
Fiber protein Fb34
Coordinates
chr7:-:45693404..45696635
Molecular Weight (calculated)
19252.4 Da
IEP (calculated)
8.255
GRAVY (calculated)
0.599
Length
182 amino acids
Sequence
(BLAST)
(BLAST)
001: MASIIVQAVV ILLDVIAFGL GVAAEQRRSR ATVTPDAAKE YDYCVYDSDI ATGYGVGALL LLAAAQVVLM LASRCFCCGR GLKPGGSRAC ALILFLFTWV
101: TFLIAEACLL AGSVRNAYHT RYRGVFYGES LSCETVRKGV FAAGAAFTFF TAILGEVYYL SYSKSRDAAG GAGSSIGMGP YN
101: TFLIAEACLL AGSVRNAYHT RYRGVFYGES LSCETVRKGV FAAGAAFTFF TAILGEVYYL SYSKSRDAAG GAGSSIGMGP YN
001: MASKIVSAIV FVFNLIAFGL AVAAEQRRST ARVVQDTEVQ YNYCVYDSDR ATGYGVGAFL FSVASQILIM LVSRCFCCGK PLKPGGSRAL ALILFIVSWM
101: FFLIAEICLL AGSVENAYHT KYRTMFMDNP PDCQTLRKGV FAAGASFVFF NAIVSQFYYF FYFSAAEASL SPY
101: FFLIAEICLL AGSVENAYHT KYRTMFMDNP PDCQTLRKGV FAAGASFVFF NAIVSQFYYF FYFSAAEASL SPY
Arabidopsis Description
At4g27438 [Source:UniProtKB/TrEMBL;Acc:Q940M6]
SUBAcon: [endoplasmic reticulum,vacuole,plasma membrane]
SUBAcon: [endoplasmic reticulum,vacuole,plasma membrane]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.