Factsheet for Zm00001d037463_P001

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

plastid 1
extracellular 4
endoplasmic reticulum 5
vacuole 4
plasma membrane 6
golgi 4

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	plastid, secretory
ChloroP:	plastid
iPSORT:	secretory
MultiLoc:	endoplasmic reticulum
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plasma membrane
YLoc:	plasma membrane

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EER88397	Sorghum	endoplasmic reticulum, plasma membrane, vacuole	75.0	94.74
Os09t0281300-02	Rice	endoplasmic reticulum, plasma membrane	67.92	85.79
TraesCS7B01G249300.1	Wheat	extracellular	63.75	80.1
HORVU7Hr1G083180.1	Barley	extracellular	63.75	80.1
TraesCS7D01G345300.1	Wheat	extracellular	63.33	79.58
TraesCS7A01G338100.1	Wheat	extracellular	63.33	79.58
GSMUA_Achr1P20960_001	Banana	endoplasmic reticulum, plasma membrane	61.25	78.19
VIT_01s0011g03560.t01	Wine grape	extracellular	58.75	74.21
KRH75370	Soybean	extracellular	55.42	69.63
KRH45268	Soybean	extracellular	54.58	68.59
Solyc05g009330.2.1	Tomato	plasma membrane	53.33	67.37
PGSC0003DMT400037709	Potato	plasma membrane	52.5	66.32
AT1G13380.1	Thale cress	endoplasmic reticulum, plasma membrane, vacuole	51.25	65.43
Bra019828.1-P	Field mustard	endoplasmic reticulum, extracellular, plasma membrane	51.25	65.08
CDX97989	Canola	endoplasmic reticulum, extracellular, plasma membrane	51.25	65.08
GSMUA_Achr11P...	Banana	extracellular, plasma membrane	54.17	62.5
CDY19370	Canola	plasma membrane, plastid	51.67	50.2
Zm00001d019597_P001	Maize	plasma membrane	37.5	49.45
Zm00001d005394_P001	Maize	endoplasmic reticulum, extracellular, vacuole	36.67	47.57
Zm00001d026625_P001	Maize	endoplasmic reticulum, plasma membrane, vacuole	32.92	42.25
Zm00001d050182_P001	Maize	plasma membrane	32.5	39.2
Zm00001d024066_P001	Maize	plasma membrane	32.08	38.69

Protein Annotations

EnsemblPlants:Zm00001d037463_P001	EnsemblPlants:Zm00001d037463_T001	EnsemblPlantsGene:Zm00001d037463	GO:GO:0005575	GO:GO:0016020	GO:GO:0016021
InterPro:DUF1218	PANTHER:PTHR31769	PANTHER:PTHR31769:SF5	PFAM:PF06749	ProteinID:AQK84037.1	SEG:seg
SignalP:SignalP-TM	TMHMM:TMhelix	UniParc:UPI0008459ECF	UniProt:A0A1D6LY05	MapMan:35.2	:

Description

Fiber protein Fb34

Coordinates

chr6:-:126031709..126051619

Molecular Weight (calculated)

26229.1 Da

IEP (calculated)

10.368

GRAVY (calculated)

0.322

Length

240 amino acids

Sequence
(BLAST)

001: MGDTGSSSIL VHILVVALCL TAFGFAVAAE RRRSTVIERN SRRIRRRTFL RVTLSPKIYL KVGREATSAI NGSILRLNRS MPLNRGSIVT DSSNATFCVY
101: DSDIATGYGV GAFLFLLSGH SLLMGVTRCM CFGAPLAPGG SRAWSIIYFA SSWITFAVAE ACLIAGATKN AYHTKYRDMV YAGNWTCQTL RKGVFIAGAV
201: FVVFTMILDV YFYMYYSKAT SQATKRISKT TPSVGMTGYA

Best Arabidopsis Sequence Match ( AT1G13380.1 )
(BLAST)

001: MGEGKASTLV FILVVALSLV AFGFSIAAER RRSIGKSIQD PITNTTFCVY DSDVATGYGV GAFLFLLSSE SLLMSVTKCM CFGRPLAPGS DRAWSIIYFI
101: SSWMTFLVAE ACVIAGATKN AYHTKYLSSQ TFSCASLRKG IFIAGAVFIV ATMVLNVYYY MYFTKSVSSP PAHKANRSSS NIGMAGYA

Arabidopsis Description

Expressed protein [Source:UniProtKB/TrEMBL;Acc:Q9FX59]
SUBAcon: [endoplasmic reticulum,vacuole,plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.