Factsheet for PGSC0003DMT400037709

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

extracellular 5
endoplasmic reticulum 6
vacuole 5
plasma membrane 8
golgi 5

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	secretory
BaCelLo:	secretory
iPSORT:	secretory
MultiLoc:	endoplasmic reticulum
Plant-mPloc:	plasma membrane
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plasma membrane
YLoc:	plasma membrane

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc05g009330.2.1	Tomato	plasma membrane	96.84	96.84
KRH45268	Soybean	extracellular	78.42	78.01
KRH75370	Soybean	extracellular	76.84	76.44
VIT_01s0011g03560.t01	Wine grape	extracellular	76.32	76.32
CDX97989	Canola	endoplasmic reticulum, extracellular, plasma membrane	73.16	73.55
Bra019828.1-P	Field mustard	endoplasmic reticulum, extracellular, plasma membrane	73.16	73.55
AT1G13380.1	Thale cress	endoplasmic reticulum, plasma membrane, vacuole	72.63	73.4
GSMUA_Achr1P20960_001	Banana	endoplasmic reticulum, plasma membrane	71.05	71.81
TraesCS7D01G345300.1	Wheat	extracellular	68.95	68.59
TraesCS7B01G249300.1	Wheat	extracellular	68.95	68.59
TraesCS7A01G338100.1	Wheat	extracellular	68.95	68.59
HORVU7Hr1G083180.1	Barley	extracellular	67.89	67.54
EER88397	Sorghum	endoplasmic reticulum, plasma membrane, vacuole	66.84	66.84
Os09t0281300-02	Rice	endoplasmic reticulum, plasma membrane	66.84	66.84
GSMUA_Achr11P...	Banana	extracellular, plasma membrane	62.11	56.73
CDY19370	Canola	plasma membrane, plastid	73.16	56.28
Zm00001d037463_P001	Maize	plasma membrane	66.32	52.5
PGSC0003DMT400057628	Potato	extracellular, plasma membrane, vacuole	47.37	49.45
PGSC0003DMT400039574	Potato	extracellular, plasma membrane, vacuole	47.37	48.39
PGSC0003DMT400032432	Potato	endoplasmic reticulum, plasma membrane, vacuole	46.84	47.85
PGSC0003DMT400078545	Potato	extracellular	46.32	45.36
PGSC0003DMT400039595	Potato	extracellular, mitochondrion	26.84	36.17

Protein Annotations

EnsemblPlants:PGSC0003DMT400037709	EnsemblPlantsGene:PGSC0003DMG400014546	EntrezGene:102606050	GO:GO:0005575	GO:GO:0016020	GO:GO:0016021
InterPro:DUF1218	PANTHER:PTHR31769	PANTHER:PTHR31769:SF5	PFAM:PF06749	PGSC:PGSC0003DMG400014546	RefSeq:XP_006344136.1
SEG:seg	SignalP:SignalP-TM	TMHMM:TMhelix	UniParc:UPI00029624FD	UniProt:M1B5R5	MapMan:35.2

Description

Fiber protein Fb34 [Source:PGSC_GENE;Acc:PGSC0003DMG400014546]

Coordinates

chr5:+:2886031..2891012

Molecular Weight (calculated)

20793.4 Da

IEP (calculated)

9.150

GRAVY (calculated)

0.427

Length

190 amino acids

Sequence
(BLAST)

001: MAEGRGSSLV HLLVIVLSLI AFGFAIAAER RRSTGTLHDD IVTNRTYCVY TSDVATGYGV GAFLFLLSGE ALLMGITKCM CFGRPLSPGS NRAWTIIYFV
101: SSWLTFLVAE ACVIAGAKQN AYHTKYRDML LAENFSCETL RKGVFVAGAV FIVANMILNV YFYMYFTKAT TQPAHKTNRT SSNIGMAGYA

Best Arabidopsis Sequence Match ( AT1G13380.1 )
(BLAST)

001: MGEGKASTLV FILVVALSLV AFGFSIAAER RRSIGKSIQD PITNTTFCVY DSDVATGYGV GAFLFLLSSE SLLMSVTKCM CFGRPLAPGS DRAWSIIYFI
101: SSWMTFLVAE ACVIAGATKN AYHTKYLSSQ TFSCASLRKG IFIAGAVFIV ATMVLNVYYY MYFTKSVSSP PAHKANRSSS NIGMAGYA

Arabidopsis Description

Expressed protein [Source:UniProtKB/TrEMBL;Acc:Q9FX59]
SUBAcon: [endoplasmic reticulum,vacuole,plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.