Subcellular Localization
min:
: max
Winner_takes_all: endoplasmic reticulum, vacuole, plasma membrane
Predictor Summary:
Predictor Summary:
- extracellular 5
- endoplasmic reticulum 6
- vacuole 6
- plasma membrane 7
- golgi 6
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc07g063340.2.1 | Tomato | nucleus | 97.85 | 97.85 |
| PGSC0003DMT400039574 | Potato | extracellular, plasma membrane, vacuole | 77.96 | 77.96 |
| KRH27207 | Soybean | endoplasmic reticulum | 73.12 | 73.51 |
| KRH22133 | Soybean | extracellular, plasma membrane, vacuole | 72.58 | 72.97 |
| KRH55341 | Soybean | endoplasmic reticulum, extracellular, vacuole | 33.87 | 67.74 |
| PGSC0003DMT400039595 | Potato | extracellular, mitochondrion | 50.0 | 65.96 |
| PGSC0003DMT400057628 | Potato | extracellular, plasma membrane, vacuole | 62.37 | 63.74 |
| Os04t0678200-01 | Rice | plasma membrane | 53.23 | 54.1 |
| EES11652 | Sorghum | endoplasmic reticulum, extracellular, vacuole | 51.61 | 52.46 |
| TraesCS2A01G591700.1 | Wheat | endoplasmic reticulum, plasma membrane, vacuole | 50.0 | 51.96 |
| Zm00001d026625_P001 | Maize | endoplasmic reticulum, plasma membrane, vacuole | 51.61 | 51.34 |
| TraesCS2B01G592000.1 | Wheat | endoplasmic reticulum, plasma membrane, vacuole | 50.54 | 51.09 |
| TraesCS2D01G562500.1 | Wheat | endoplasmic reticulum, plasma membrane, vacuole | 50.54 | 51.09 |
| PGSC0003DMT400037709 | Potato | plasma membrane | 47.85 | 46.84 |
| PGSC0003DMT400078545 | Potato | extracellular | 47.85 | 45.88 |
| TraesCS2A01G591800.1 | Wheat | extracellular | 19.89 | 35.58 |
Protein Annotations
| EnsemblPlants:PGSC0003DMT400032432 | EnsemblPlantsGene:PGSC0003DMG400012457 | EntrezGene:102583075 | GO:GO:0005575 | GO:GO:0016020 | GO:GO:0016021 |
| InterPro:DUF1218 | PANTHER:PTHR31769 | PANTHER:PTHR31769:SF39 | PFAM:PF06749 | PGSC:PGSC0003DMG400012457 | RefSeq:XP_006348231.1 |
| SEG:seg | SignalP:SignalP-TM | TMHMM:TMhelix | UniParc:UPI000296E74B | UniProt:M1AXF7 | MapMan:35.2 |
Description
Fiber protein Fb34 [Source:PGSC_GENE;Acc:PGSC0003DMG400012457]
Coordinates
chr7:-:53386099..53388213
Molecular Weight (calculated)
20259.0 Da
IEP (calculated)
8.885
GRAVY (calculated)
0.545
Length
186 amino acids
Sequence
(BLAST)
(BLAST)
001: MASKLLMLTI FVFDLIAFGL AIAAERRRST AKIKQDGEDE HSYCVYDSDI ATGFGVGAFL FLMLSQIIIM VASRCFCCGK ALRPGGSRAC AVLLFIICWV
101: AFFIAEVCLL AGSVRNAYHT KYRSSYLTSD KPLSCETLRK GVFAAGAAFI FFTSILSQFY YVTYAKARGG PMPYGGEAGV GMAAYK
101: AFFIAEVCLL AGSVRNAYHT KYRSSYLTSD KPLSCETLRK GVFAAGAAFI FFTSILSQFY YVTYAKARGG PMPYGGEAGV GMAAYK
001: MASKLVIIIV FILDLIAVGL AIAAEQRRSV GKVVPDGEKE FEHCEYGSDI ATSYGAGAFV LLFISQVIIM VASRCFCCGK ALKPGGSRAC GIMLFLICWV
101: FFLIAEVCLL AGSIRNAYHT TYRRMWNIEN PPSCEVIRKG VFAAGASFAL FTAIVSQFYY ISYSRARDGY QTPHY
101: FFLIAEVCLL AGSIRNAYHT TYRRMWNIEN PPSCEVIRKG VFAAGASFAL FTAIVSQFYY ISYSRARDGY QTPHY
Arabidopsis Description
At1g52910 [Source:UniProtKB/TrEMBL;Acc:Q9C930]
SUBAcon: [endoplasmic reticulum,extracellular,vacuole]
SUBAcon: [endoplasmic reticulum,extracellular,vacuole]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.