Factsheet for PGSC0003DMT400039595

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, extracellular

Predictor Summary:

nucleus 1
mitochondrion 3
extracellular 3
plasma membrane 2
endoplasmic reticulum 1
vacuole 1
golgi 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular, mitochondrion
Any Predictor:	mitochondrion, nucleus, plastid, secretory
BaCelLo:	nucleus
iPSORT:	mitochondrion
MultiLoc:	extracellular
Plant-mPloc:	plasma membrane
Predotar:	mitochondrion
PProwler:	secretory
TargetP:	mitochondrion
WoLF PSORT:	plastid
YLoc:	extracellular

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400039574	Potato	extracellular, plasma membrane, vacuole	82.27	62.37
Solyc12g013650.1.1	Tomato	extracellular, plasma membrane, vacuole	81.56	61.83
PGSC0003DMT400032432	Potato	endoplasmic reticulum, plasma membrane, vacuole	65.96	50.0
KRH22133	Soybean	extracellular, plasma membrane, vacuole	60.28	45.95
KRH27207	Soybean	endoplasmic reticulum	59.57	45.41
PGSC0003DMT400057628	Potato	extracellular, plasma membrane, vacuole	48.23	37.36
TraesCS2A01G591700.1	Wheat	endoplasmic reticulum, plasma membrane, vacuole	43.26	34.08
EES11652	Sorghum	endoplasmic reticulum, extracellular, vacuole	43.26	33.33
Zm00001d026625_P001	Maize	endoplasmic reticulum, plasma membrane, vacuole	43.97	33.16
TraesCS2D01G562500.1	Wheat	endoplasmic reticulum, plasma membrane, vacuole	43.26	33.15
TraesCS2B01G592000.1	Wheat	endoplasmic reticulum, plasma membrane, vacuole	42.55	32.61
Os04t0678200-01	Rice	plasma membrane	41.13	31.69
PGSC0003DMT400078545	Potato	extracellular	37.59	27.32
PGSC0003DMT400037709	Potato	plasma membrane	36.17	26.84
KRH55341	Soybean	endoplasmic reticulum, extracellular, vacuole	15.6	23.66
TraesCS2A01G591800.1	Wheat	extracellular	12.06	16.35

Protein Annotations

EnsemblPlants:PGSC0003DMT400039595	EnsemblPlantsGene:PGSC0003DMG402015315	GO:GO:0005575	GO:GO:0016020	GO:GO:0016021	InterPro:DUF1218
PANTHER:PTHR31769	PANTHER:PTHR31769:SF39	PFAM:PF06749	PGSC:PGSC0003DMG402015315	SEG:seg	TMHMM:TMhelix
UniParc:UPI000294E954	UniProt:M1B8I1	MapMan:35.2	:	:	:

Description

Fiber protein Fb34 [Source:PGSC_GENE;Acc:PGSC0003DMG402015315]

Coordinates

chr12:-:754217..754875

Molecular Weight (calculated)

15683.2 Da

IEP (calculated)

9.471

GRAVY (calculated)

0.458

Length

141 amino acids

Sequence
(BLAST)

001: MVASRCFCFG KPLSPGGSRG CAVLLFIMCW YMTHHNIFFQ TRYNVIIIIN LCFRVTFFIA EVCLLAGSVR NAYHTKYRSS LLFNDRPVSC ETVRKGVFAA
101: GAAFIFFTSI INKFYFISYS NAKDGAGPYG GEAGVGMAAY K

Best Arabidopsis Sequence Match ( AT1G52910.1 )
(BLAST)

001: MASKLVIIIV FILDLIAVGL AIAAEQRRSV GKVVPDGEKE FEHCEYGSDI ATSYGAGAFV LLFISQVIIM VASRCFCCGK ALKPGGSRAC GIMLFLICWV
101: FFLIAEVCLL AGSIRNAYHT TYRRMWNIEN PPSCEVIRKG VFAAGASFAL FTAIVSQFYY ISYSRARDGY QTPHY

Arabidopsis Description

At1g52910 [Source:UniProtKB/TrEMBL;Acc:Q9C930]
SUBAcon: [endoplasmic reticulum,extracellular,vacuole]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.