Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane, extracellular, vacuole
Predictor Summary:
Predictor Summary:
- extracellular 6
- endoplasmic reticulum 5
- vacuole 6
- plasma membrane 7
- golgi 5
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc12g013650.1.1 | Tomato | extracellular, plasma membrane, vacuole | 97.31 | 97.31 |
| PGSC0003DMT400039595 | Potato | extracellular, mitochondrion | 62.37 | 82.27 |
| PGSC0003DMT400032432 | Potato | endoplasmic reticulum, plasma membrane, vacuole | 77.96 | 77.96 |
| KRH22133 | Soybean | extracellular, plasma membrane, vacuole | 73.12 | 73.51 |
| KRH55341 | Soybean | endoplasmic reticulum, extracellular, vacuole | 36.56 | 73.12 |
| KRH27207 | Soybean | endoplasmic reticulum | 72.58 | 72.97 |
| PGSC0003DMT400057628 | Potato | extracellular, plasma membrane, vacuole | 59.68 | 60.99 |
| Os04t0678200-01 | Rice | plasma membrane | 51.61 | 52.46 |
| EES11652 | Sorghum | endoplasmic reticulum, extracellular, vacuole | 51.08 | 51.91 |
| TraesCS2A01G591700.1 | Wheat | endoplasmic reticulum, plasma membrane, vacuole | 49.46 | 51.4 |
| Zm00001d026625_P001 | Maize | endoplasmic reticulum, plasma membrane, vacuole | 51.08 | 50.8 |
| TraesCS2D01G562500.1 | Wheat | endoplasmic reticulum, plasma membrane, vacuole | 49.46 | 50.0 |
| TraesCS2B01G592000.1 | Wheat | endoplasmic reticulum, plasma membrane, vacuole | 48.92 | 49.46 |
| PGSC0003DMT400037709 | Potato | plasma membrane | 48.39 | 47.37 |
| PGSC0003DMT400078545 | Potato | extracellular | 45.7 | 43.81 |
| TraesCS2A01G591800.1 | Wheat | extracellular | 22.04 | 39.42 |
Protein Annotations
| EnsemblPlants:PGSC0003DMT400039574 | EnsemblPlantsGene:PGSC0003DMG401015311 | EntrezGene:102590575 | GO:GO:0005575 | GO:GO:0016020 | GO:GO:0016021 |
| InterPro:DUF1218 | PANTHER:PTHR31769 | PANTHER:PTHR31769:SF39 | PFAM:PF06749 | PGSC:PGSC0003DMG401015311 | RefSeq:XP_006358987.1 |
| SEG:seg | SignalP:SignalP-TM | TMHMM:TMhelix | UniParc:UPI0002968816 | UniProt:M1B8H5 | MapMan:35.2 |
Description
Fiber protein Fb34 [Source:PGSC_GENE;Acc:PGSC0003DMG401015311]
Coordinates
chr12:-:801897..804003
Molecular Weight (calculated)
20115.6 Da
IEP (calculated)
8.654
GRAVY (calculated)
0.613
Length
186 amino acids
Sequence
(BLAST)
(BLAST)
001: MASKLLMISV FVFDVIAFAL AIAAEQRRST ATIQTDNEQV YTYCVYDSDI STGFGVGAFL FLMAGQILIM VASRCFCFGK PLSPGGSRGC AVLLFIMCWV
101: TFFIAEVCLL AGSVRNAYHT KYRSSLLFND RPVSCETVRK GVFAAGAAFI FFTSIINKFY FISYSNAKGG AGPYGGEAGV GMAAYK
101: TFFIAEVCLL AGSVRNAYHT KYRSSLLFND RPVSCETVRK GVFAAGAAFI FFTSIINKFY FISYSNAKGG AGPYGGEAGV GMAAYK
001: MASKIVSAIV FVFNLIAFGL AVAAEQRRST ARVVQDTEVQ YNYCVYDSDR ATGYGVGAFL FSVASQILIM LVSRCFCCGK PLKPGGSRAL ALILFIVSWM
101: FFLIAEICLL AGSVENAYHT KYRTMFMDNP PDCQTLRKGV FAAGASFVFF NAIVSQFYYF FYFSAAEASL SPY
101: FFLIAEICLL AGSVENAYHT KYRTMFMDNP PDCQTLRKGV FAAGASFVFF NAIVSQFYYF FYFSAAEASL SPY
Arabidopsis Description
At4g27438 [Source:UniProtKB/TrEMBL;Acc:Q940M6]
SUBAcon: [endoplasmic reticulum,vacuole,plasma membrane]
SUBAcon: [endoplasmic reticulum,vacuole,plasma membrane]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.