Subcellular Localization
min:
: max
Winner_takes_all: endoplasmic reticulum
Predictor Summary:
Predictor Summary:
- extracellular 6
- endoplasmic reticulum 5
- vacuole 6
- plasma membrane 7
- golgi 5
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
endoplasmic reticulum:
28499913
|
msms PMID:
28499913
doi
Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRH22133 | Soybean | extracellular, plasma membrane, vacuole | 97.3 | 97.3 |
| KRH55341 | Soybean | endoplasmic reticulum, extracellular, vacuole | 38.92 | 77.42 |
| PGSC0003DMT400032432 | Potato | endoplasmic reticulum, plasma membrane, vacuole | 73.51 | 73.12 |
| Solyc12g013650.1.1 | Tomato | extracellular, plasma membrane, vacuole | 72.97 | 72.58 |
| PGSC0003DMT400039574 | Potato | extracellular, plasma membrane, vacuole | 72.97 | 72.58 |
| Solyc07g063340.2.1 | Tomato | nucleus | 72.43 | 72.04 |
| PGSC0003DMT400039595 | Potato | extracellular, mitochondrion | 45.41 | 59.57 |
| KRH49998 | Soybean | endoplasmic reticulum, extracellular, vacuole | 58.38 | 59.02 |
| KRH20498 | Soybean | endoplasmic reticulum, extracellular | 56.76 | 57.38 |
| KRH25778 | Soybean | extracellular | 23.78 | 55.0 |
| EES11652 | Sorghum | endoplasmic reticulum, extracellular, vacuole | 52.97 | 53.55 |
| Os04t0678200-01 | Rice | plasma membrane | 52.97 | 53.55 |
| Zm00001d026625_P001 | Maize | endoplasmic reticulum, plasma membrane, vacuole | 51.89 | 51.34 |
| KRH13651 | Soybean | endoplasmic reticulum, extracellular | 29.73 | 49.11 |
| TraesCS2A01G591700.1 | Wheat | endoplasmic reticulum, plasma membrane, vacuole | 47.03 | 48.6 |
| TraesCS2D01G562500.1 | Wheat | endoplasmic reticulum, plasma membrane, vacuole | 47.57 | 47.83 |
| TraesCS2B01G592000.1 | Wheat | endoplasmic reticulum, plasma membrane, vacuole | 47.03 | 47.28 |
| KRH75370 | Soybean | extracellular | 47.03 | 45.55 |
| KRH45268 | Soybean | extracellular | 45.95 | 44.5 |
| KRH35900 | Soybean | extracellular | 43.24 | 41.03 |
| TraesCS2A01G591800.1 | Wheat | extracellular | 20.0 | 35.58 |
Protein Annotations
| EMBL:ACUP02007784 | EnsemblPlants:KRH27207 | EnsemblPlantsGene:GLYMA_12G222000 | GO:GO:0005575 | GO:GO:0016020 | GO:GO:0016021 |
| InterPro:DUF1218 | PANTHER:PTHR31769 | PANTHER:PTHR31769:SF39 | PFAM:PF06749 | ProteinID:KRH27206.1 | ProteinID:KRH27207 |
| ProteinID:KRH27207.1 | SEG:seg | SignalP:SignalP-TM | TMHMM:TMhelix | UniParc:UPI00023D045C | UniProt:I1LUY2 |
| MapMan:35.2 | : | : | : | : | : |
Description
hypothetical protein
Coordinates
chr12:+:38129759..38132491
Molecular Weight (calculated)
20219.6 Da
IEP (calculated)
7.952
GRAVY (calculated)
0.535
Length
185 amino acids
Sequence
(BLAST)
(BLAST)
001: MASKLLLITV FVFDLIAFGL AVAAEQRRST ASIVPDNEKN YNYCVYNSDI ATGYGVGAFL FLLVSQVLIM VASRCFCCGK PLNPGGSRAC AVVLFIICWV
101: FFIISEVCLL AGSVENAYHT KYRTIFGENP PSCETVRKGV FAAGAAFIFF TAIVSEFYYI NYSRARESFQ PYAGGETGVG MGTYK
101: FFIISEVCLL AGSVENAYHT KYRTIFGENP PSCETVRKGV FAAGAAFIFF TAIVSEFYYI NYSRARESFQ PYAGGETGVG MGTYK
001: MASKIVSAIV FVFNLIAFGL AVAAEQRRST ARVVQDTEVQ YNYCVYDSDR ATGYGVGAFL FSVASQILIM LVSRCFCCGK PLKPGGSRAL ALILFIVSWM
101: FFLIAEICLL AGSVENAYHT KYRTMFMDNP PDCQTLRKGV FAAGASFVFF NAIVSQFYYF FYFSAAEASL SPY
101: FFLIAEICLL AGSVENAYHT KYRTMFMDNP PDCQTLRKGV FAAGASFVFF NAIVSQFYYF FYFSAAEASL SPY
Arabidopsis Description
At4g27438 [Source:UniProtKB/TrEMBL;Acc:Q940M6]
SUBAcon: [endoplasmic reticulum,vacuole,plasma membrane]
SUBAcon: [endoplasmic reticulum,vacuole,plasma membrane]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.