Factsheet for Solyc07g063340.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

extracellular 5
endoplasmic reticulum 6
vacuole 6
plasma membrane 7
golgi 6

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	secretory
BaCelLo:	secretory
iPSORT:	secretory
MultiLoc:	endoplasmic reticulum
Plant-mPloc:	golgi, plasma membrane
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	vacuole
YLoc:	plasma membrane

nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400032432	Potato	endoplasmic reticulum, plasma membrane, vacuole	97.85	97.85
Solyc12g013650.1.1	Tomato	extracellular, plasma membrane, vacuole	76.88	76.88
KRH22133	Soybean	extracellular, plasma membrane, vacuole	72.58	72.97
KRH27207	Soybean	endoplasmic reticulum	72.04	72.43
KRH55341	Soybean	endoplasmic reticulum, extracellular, vacuole	33.33	66.67
Solyc02g078630.2.1	Tomato	extracellular, plasma membrane, vacuole	61.83	63.19
Os04t0678200-01	Rice	plasma membrane	53.76	54.64
EES11652	Sorghum	endoplasmic reticulum, extracellular, vacuole	51.61	52.46
TraesCS2A01G591700.1	Wheat	endoplasmic reticulum, plasma membrane, vacuole	50.0	51.96
Zm00001d026625_P001	Maize	endoplasmic reticulum, plasma membrane, vacuole	52.15	51.87
TraesCS2B01G592000.1	Wheat	endoplasmic reticulum, plasma membrane, vacuole	50.54	51.09
TraesCS2D01G562500.1	Wheat	endoplasmic reticulum, plasma membrane, vacuole	50.54	51.09
Solyc05g008900.2.1	Tomato	extracellular	47.85	45.88
Solyc05g009330.2.1	Tomato	plasma membrane	46.77	45.79
TraesCS2A01G591800.1	Wheat	extracellular	19.89	35.58

Protein Annotations

EnsemblPlants:Solyc07g063340.2.1	EnsemblPlantsGene:Solyc07g063340.2	GO:GO:0005575	GO:GO:0016020	GO:GO:0016021	InterPro:DUF1218
PANTHER:PTHR31769	PANTHER:PTHR31769:SF39	PFAM:PF06749	SEG:seg	SignalP:SignalP-TM	TMHMM:TMhelix
UniParc:UPI000276BC4B	UniProt:K4CH17	MapMan:35.2	:	:	:

Description

No Description!

Coordinates

chr7:-:65830893..65833114

Molecular Weight (calculated)

20216.9 Da

IEP (calculated)

8.885

GRAVY (calculated)

0.541

Length

186 amino acids

Sequence
(BLAST)

001: MASKLLMLTI FVFDLIAFGL AIAAERRRST ANIKKDGEDE HSYCVYDSDI ATGFGVGAFL FLMLSQIIVM VASRCFCCGK ALRPGGSRAC AVLLFIICWV
101: AFFIAEVCLL AGSVRNAYHT KYRSSYLTSD KPLSCETLRK GVFAAGAAFV FFTSILSQFY YVTYAKARGG PMPYGGEAGV GMAAYK

Best Arabidopsis Sequence Match ( AT1G52910.1 )
(BLAST)

001: MASKLVIIIV FILDLIAVGL AIAAEQRRSV GKVVPDGEKE FEHCEYGSDI ATSYGAGAFV LLFISQVIIM VASRCFCCGK ALKPGGSRAC GIMLFLICWV
101: FFLIAEVCLL AGSIRNAYHT TYRRMWNIEN PPSCEVIRKG VFAAGASFAL FTAIVSQFYY ISYSRARDGY QTPHY

Arabidopsis Description

At1g52910 [Source:UniProtKB/TrEMBL;Acc:Q9C930]
SUBAcon: [endoplasmic reticulum,extracellular,vacuole]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.