Subcellular Localization
min:
: max
Winner_takes_all: endoplasmic reticulum, extracellular, plasma membrane
Predictor Summary:
Predictor Summary:
- extracellular 6
- endoplasmic reticulum 6
- vacuole 5
- plasma membrane 7
- golgi 5
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra019828.1-P | Field mustard | endoplasmic reticulum, extracellular, plasma membrane | 100.0 | 100.0 |
| AT1G13380.1 | Thale cress | endoplasmic reticulum, plasma membrane, vacuole | 89.42 | 89.89 |
| KRH45268 | Soybean | extracellular | 76.72 | 75.92 |
| CDY19370 | Canola | plasma membrane, plastid | 98.94 | 75.71 |
| Solyc05g009330.2.1 | Tomato | plasma membrane | 75.66 | 75.26 |
| VIT_01s0011g03560.t01 | Wine grape | extracellular | 75.66 | 75.26 |
| KRH75370 | Soybean | extracellular | 74.6 | 73.82 |
| PGSC0003DMT400037709 | Potato | plasma membrane | 73.55 | 73.16 |
| GSMUA_Achr1P20960_001 | Banana | endoplasmic reticulum, plasma membrane | 71.96 | 72.34 |
| HORVU7Hr1G083180.1 | Barley | extracellular | 67.72 | 67.02 |
| Os09t0281300-02 | Rice | endoplasmic reticulum, plasma membrane | 67.2 | 66.84 |
| TraesCS7D01G345300.1 | Wheat | extracellular | 67.2 | 66.49 |
| TraesCS7B01G249300.1 | Wheat | extracellular | 67.2 | 66.49 |
| TraesCS7A01G338100.1 | Wheat | extracellular | 67.2 | 66.49 |
| EER88397 | Sorghum | endoplasmic reticulum, plasma membrane, vacuole | 65.61 | 65.26 |
| GSMUA_Achr11P... | Banana | extracellular, plasma membrane | 61.9 | 56.25 |
| Zm00001d037463_P001 | Maize | plasma membrane | 65.08 | 51.25 |
| CDY29310 | Canola | endoplasmic reticulum, plasma membrane, vacuole | 42.33 | 46.24 |
| CDX89250 | Canola | endoplasmic reticulum, plasma membrane, vacuole | 42.33 | 46.24 |
| CDX92831 | Canola | endoplasmic reticulum, extracellular, vacuole | 41.8 | 45.66 |
| CDY29839 | Canola | endoplasmic reticulum, extracellular, vacuole | 41.27 | 45.09 |
| CDY02534 | Canola | endoplasmic reticulum, extracellular, vacuole | 41.27 | 44.57 |
| CDY56821 | Canola | endoplasmic reticulum, extracellular, vacuole | 40.21 | 43.43 |
| CDY53808 | Canola | endoplasmic reticulum, extracellular, vacuole | 40.21 | 43.43 |
| CDY26029 | Canola | endoplasmic reticulum, extracellular, vacuole | 40.21 | 43.43 |
| CDX97672 | Canola | endoplasmic reticulum, plasma membrane, vacuole | 38.1 | 41.14 |
| CDY67483 | Canola | extracellular | 37.57 | 39.44 |
| CDY50209 | Canola | extracellular | 37.57 | 39.44 |
| CDY01897 | Canola | extracellular | 39.68 | 37.69 |
| CDX96039 | Canola | extracellular | 39.68 | 37.69 |
| CDY52490 | Canola | extracellular | 15.87 | 34.88 |
Protein Annotations
| EnsemblPlants:CDX97989 | EnsemblPlantsGene:GSBRNA2T00105345001 | GO:A0A078EB24 | InterPro:DUF1218 | PANTHER:PTHR31769 | PANTHER:PTHR31769:SF5 |
| PFAM:PF06749 | ProteinID:CDX97989 | ProteinID:CDX97989.1 | SEG:seg | SignalP:SignalP-TM | TMHMM:TMhelix |
| UniParc:UPI000253EBE8 | MapMan:35.2 | : | : | : | : |
Description
BnaA06g07400D
Coordinates
chrLK031902:+:390397..391614
Molecular Weight (calculated)
20281.7 Da
IEP (calculated)
9.178
GRAVY (calculated)
0.476
Length
189 amino acids
Sequence
(BLAST)
(BLAST)
001: MGEGKGSTLV FVLVIALCLV AFGFSIAAER RRSIGKSIQD PITNATYCVY SSDVATGYGV GAFLFLLSSE SLLMGVTKCM CFGRPLSPGS DRAWSIIYFI
101: SSWMTFLVAE ACLIAGATKN AYHTKYLSAQ AFSCESLRKG IFIAGAVFTV ATMILNVYYY FHFTKSVSSP PTHKANRSGS NIGMAGGYA
101: SSWMTFLVAE ACLIAGATKN AYHTKYLSAQ AFSCESLRKG IFIAGAVFTV ATMILNVYYY FHFTKSVSSP PTHKANRSGS NIGMAGGYA
001: MGEGKASTLV FILVVALSLV AFGFSIAAER RRSIGKSIQD PITNTTFCVY DSDVATGYGV GAFLFLLSSE SLLMSVTKCM CFGRPLAPGS DRAWSIIYFI
101: SSWMTFLVAE ACVIAGATKN AYHTKYLSSQ TFSCASLRKG IFIAGAVFIV ATMVLNVYYY MYFTKSVSSP PAHKANRSSS NIGMAGYA
101: SSWMTFLVAE ACVIAGATKN AYHTKYLSSQ TFSCASLRKG IFIAGAVFIV ATMVLNVYYY MYFTKSVSSP PAHKANRSSS NIGMAGYA
Arabidopsis Description
Expressed protein [Source:UniProtKB/TrEMBL;Acc:Q9FX59]
SUBAcon: [endoplasmic reticulum,vacuole,plasma membrane]
SUBAcon: [endoplasmic reticulum,vacuole,plasma membrane]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.