Subcellular Localization
min:
: max
Winner_takes_all: endoplasmic reticulum, vacuole, plasma membrane
Predictor Summary:
Predictor Summary:
- extracellular 5
- endoplasmic reticulum 6
- vacuole 6
- plasma membrane 7
- golgi 5
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX89250 | Canola | endoplasmic reticulum, plasma membrane, vacuole | 98.84 | 98.84 |
| AT4G27435.1 | Thale cress | endoplasmic reticulum, plasma membrane, vacuole | 95.95 | 95.95 |
| Bra019050.1-P | Field mustard | endoplasmic reticulum, extracellular, vacuole | 91.33 | 91.33 |
| Bra027240.1-P | Field mustard | endoplasmic reticulum, extracellular, vacuole | 64.74 | 64.0 |
| Bra019000.1-P | Field mustard | endoplasmic reticulum, extracellular, vacuole | 63.58 | 62.86 |
| Bra030968.1-P | Field mustard | endoplasmic reticulum, plasma membrane, vacuole | 52.02 | 61.64 |
| Os04t0678200-01 | Rice | plasma membrane | 53.18 | 50.27 |
| EES11652 | Sorghum | endoplasmic reticulum, extracellular, vacuole | 52.6 | 49.73 |
| Zm00001d026625_P001 | Maize | endoplasmic reticulum, plasma membrane, vacuole | 51.45 | 47.59 |
| Bra031458.1-P | Field mustard | extracellular | 23.12 | 46.51 |
| TraesCS2A01G591700.1 | Wheat | endoplasmic reticulum, plasma membrane, vacuole | 45.09 | 43.58 |
| TraesCS2B01G592000.1 | Wheat | endoplasmic reticulum, plasma membrane, vacuole | 45.09 | 42.39 |
| TraesCS2D01G562500.1 | Wheat | endoplasmic reticulum, plasma membrane, vacuole | 45.09 | 42.39 |
| Bra019828.1-P | Field mustard | endoplasmic reticulum, extracellular, plasma membrane | 46.24 | 42.33 |
| TraesCS2A01G591800.1 | Wheat | extracellular | 22.54 | 37.5 |
| Bra004290.1-P | Field mustard | endoplasmic reticulum, extracellular, plasma membrane | 41.62 | 36.18 |
Protein Annotations
| EnsemblPlants:Bra026350.1 | EnsemblPlants:Bra026350.1-P | EnsemblPlantsGene:Bra026350 | GO:GO:0005575 | GO:GO:0016020 | GO:GO:0016021 |
| InterPro:DUF1218 | PANTHER:PTHR31769 | PANTHER:PTHR31769:SF39 | PFAM:PF06749 | SEG:seg | SignalP:SignalP-TM |
| TMHMM:TMhelix | UniParc:UPI0002545B11 | UniProt:M4EC41 | MapMan:35.2 | : | : |
Description
AT4G27435 (E=7e-084) | unknown protein
Coordinates
chrA01:+:9866810..9867908
Molecular Weight (calculated)
19131.2 Da
IEP (calculated)
8.343
GRAVY (calculated)
0.588
Length
173 amino acids
Sequence
(BLAST)
(BLAST)
001: MASKIVSAIV FVFNLIAFGL AVAAEQRRST AKVVQDTEVQ YNYCVYDSDR ATGYGVGAFL FSVASQFLIM LVSRCFCCGK PLKPGGSRAL ALVLFIFSWI
101: FFLIAEICLL AGSVENAYHT KYRTMFMDNP PDCQTLRKGV FAAGASFVFF NAIVSQFYYF FYSSAADASL SPY
101: FFLIAEICLL AGSVENAYHT KYRTMFMDNP PDCQTLRKGV FAAGASFVFF NAIVSQFYYF FYSSAADASL SPY
001: MASKIVSAIV FVFNLIAFGL AVAAEQRRST ARVVQDTEVQ YNYCVYDSDR ATGYGVGAFL FSVASQILIM LVSRCFCCGK PLKPGGSRAL ALILFIVSWM
101: FFLIAEICLL AGSVENAYHT KYRTMFMDNP PDCQTLRKGV FAAGASFVFF NAIVSQFYYF FYFSAAEASL SPY
101: FFLIAEICLL AGSVENAYHT KYRTMFMDNP PDCQTLRKGV FAAGASFVFF NAIVSQFYYF FYFSAAEASL SPY
Arabidopsis Description
At4g27438 [Source:UniProtKB/TrEMBL;Acc:Q940M6]
SUBAcon: [endoplasmic reticulum,vacuole,plasma membrane]
SUBAcon: [endoplasmic reticulum,vacuole,plasma membrane]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.