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Field mustard
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Field mustard
Subcellular Localization
min:
: max

 
Winner_takes_all: extracellular, endoplasmic reticulum, vacuole

Predictor Summary:
  • extracellular 6
  • golgi 6
  • plasma membrane 5
  • endoplasmic reticulum 6
  • vacuole 6
  • nucleus 1
  • plastid 1
Predictors GFP MS/MS Papers
Winner Takes All:endoplasmic reticulum, extracellular, vacuole
Any Predictor:nucleus, plastid, secretory
BaCelLo:secretory
iPSORT:secretory
MultiLoc:endoplasmic reticulum
Plant-mPloc:golgi, nucleus, plastid
Predotar:secretory
PProwler:secretory
TargetP:secretory
WoLF PSORT:vacuole
YLoc:extracellular
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDY53808 Canola endoplasmic reticulum, extracellular, vacuole 100.0 100.0
Bra030968.1-P Field mustard endoplasmic reticulum, plasma membrane, vacuole 81.14 97.26
AT1G52910.1 Thale cress endoplasmic reticulum, extracellular, vacuole 89.71 89.71
Bra027240.1-P Field mustard endoplasmic reticulum, extracellular, vacuole 87.43 87.43
Bra026350.1-P Field mustard endoplasmic reticulum, plasma membrane, vacuole 62.86 63.58
Bra019050.1-P Field mustard endoplasmic reticulum, extracellular, vacuole 61.71 62.43
EES11652 Sorghum endoplasmic reticulum, extracellular, vacuole 50.29 48.09
Bra031458.1-P Field mustard extracellular 23.43 47.67
Zm00001d026625_P001 Maize endoplasmic reticulum, plasma membrane, vacuole 50.29 47.06
Os04t0678200-01 Rice plasma membrane 48.0 45.9
TraesCS2A01G591700.1 Wheat endoplasmic reticulum, plasma membrane, vacuole 46.86 45.81
TraesCS2B01G592000.1 Wheat endoplasmic reticulum, plasma membrane, vacuole 47.43 45.11
TraesCS2D01G562500.1 Wheat endoplasmic reticulum, plasma membrane, vacuole 46.86 44.57
TraesCS2A01G591800.1 Wheat extracellular 24.0 40.38
Bra019828.1-P Field mustard endoplasmic reticulum, extracellular, plasma membrane 43.43 40.21
Bra004290.1-P Field mustard endoplasmic reticulum, extracellular, plasma membrane 42.29 37.19
Protein Annotations
EnsemblPlants:Bra019000.1EnsemblPlants:Bra019000.1-PEnsemblPlantsGene:Bra019000GO:GO:0005575GO:GO:0016020GO:GO:0016021
InterPro:DUF1218PANTHER:PTHR31769PANTHER:PTHR31769:SF39PFAM:PF06749SEG:segSignalP:SignalP-TM
TMHMM:TMhelixUniParc:UPI000253E884UniProt:M4DR57MapMan:35.2::
Description
AT1G52910 (E=3e-079) | unknown protein
Coordinates
chrA06:-:807450..808385
Molecular Weight (calculated)
19374.9 Da
IEP (calculated)
8.615
GRAVY (calculated)
0.567
Length
175 amino acids
Sequence
(BLAST)
001: MASKLVIIIV FILDLIAVGL AIAAEQRRSV GKVVPDKEKV YEYCEYGSDI ATSYGAGAFV LLLTSQVIIM VASRCFCCGK ALNPGGSRAC AIMLFLICWV
101: FFLIAEVCLL AASIRNAYHT KYRKMWNIDN PPSCEVIRKG VFAAGASFAL FTAIVSQFYY VCYSRARDDY KNPPY
Best Arabidopsis Sequence Match ( AT1G52910.1 )
(BLAST)
001: MASKLVIIIV FILDLIAVGL AIAAEQRRSV GKVVPDGEKE FEHCEYGSDI ATSYGAGAFV LLFISQVIIM VASRCFCCGK ALKPGGSRAC GIMLFLICWV
101: FFLIAEVCLL AGSIRNAYHT TYRRMWNIEN PPSCEVIRKG VFAAGASFAL FTAIVSQFYY ISYSRARDGY QTPHY
Arabidopsis Description
At1g52910 [Source:UniProtKB/TrEMBL;Acc:Q9C930]
SUBAcon: [extracellular,endoplasmic reticulum,vacuole]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.