CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

nucleus 1
plasma membrane 3
extracellular 1
endoplasmic reticulum 1
vacuole 2
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	nucleus, plasma membrane, vacuole
BaCelLo:	nucleus
MultiLoc:	plasma membrane
PProwler:	secretory
WoLF PSORT:	vacuole
YLoc:	plasma membrane

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY46166	Canola	plasma membrane	96.89	97.49
CDY42190	Canola	golgi, plasma membrane, vacuole	91.91	92.68
CDY69762	Canola	golgi, plasma membrane, vacuole	91.7	92.47
AT3G19553.1	Thale cress	plasma membrane	91.08	91.65
VIT_03s0091g00600.t01	Wine grape	plasma membrane	76.97	73.61
KRH77938	Soybean	plasma membrane	71.58	71.43
PGSC0003DMT400013939	Potato	plasma membrane	72.41	70.36
Solyc10g049640.1.1	Tomato	plasma membrane	70.12	68.98
GSMUA_Achr2P13450_001	Banana	plasma membrane	50.0	65.14
GSMUA_Achr4P28240_001	Banana	plasma membrane	52.7	61.8
EES16229	Sorghum	plasma membrane	59.54	58.45
CDY63076	Canola	endoplasmic reticulum, plasma membrane, vacuole	45.23	58.13
TraesCS5D01G085800.1	Wheat	golgi, plasma membrane, vacuole	58.3	58.06
TraesCS5B01G079100.1	Wheat	golgi, plasma membrane, vacuole	58.3	57.94
TraesCS5A01G073000.1	Wheat	golgi, plasma membrane, vacuole	58.3	57.94
Zm00001d030832_P001	Maize	plasma membrane	59.34	57.55
Os12t0580400-01	Rice	plasma membrane	57.05	55.44
CDY12285	Canola	golgi, peroxisome, plasma membrane, plastid	55.39	53.61
CDY12286	Canola	plasma membrane	43.36	53.45
CDX70141	Canola	plasma membrane, plastid	52.28	51.75
CDX98852	Canola	plasma membrane, plastid	52.07	51.33
HORVU5Hr1G019110.1	Barley	plastid	58.09	50.54
CDX75722	Canola	plasma membrane	26.76	47.78
CDX82530	Canola	plasma membrane	45.85	46.33
CDX75721	Canola	plasma membrane	45.64	46.12
CDY23626	Canola	plasma membrane	45.44	46.11
CDX97502	Canola	plasma membrane	45.23	45.7

Protein Annotations

EnsemblPlants:CDX99215	EnsemblPlantsGene:GSBRNA2T00107419001	Gene3D:1.20.1740.10	GO:A0A078EAT4	GO:GO:0003674	GO:GO:0005215
GO:GO:0005575	GO:GO:0006810	GO:GO:0008150	GO:GO:0016020	GO:GO:0022857	GO:GO:0055085
InterPro:AA/rel_permease1	PANTHER:PTHR11785	PANTHER:PTHR11785:SF338	PFAM:PF13520	PIRSF:PIRSF006060	ProteinID:CDX99215
ProteinID:CDX99215.1	SEG:seg	TMHMM:TMhelix	UniParc:UPI0004EE5DDF	MapMan:24.2.3.5.1	:

Description

BnaC05g33300D

Coordinates

chrLK031909:+:195030..197873

Molecular Weight (calculated)

53323.4 Da

IEP (calculated)

4.896

GRAVY (calculated)

0.492

Length

482 amino acids

Sequence
(BLAST)

001: MGEEATANDE NVAKTKPSPK LTLLPLVFLI FYEVSGGPFG VEDSVKSGGG PLLALLGFLI LPLIWSIPEA LITAELATSF PENGGYVVWI SSAFGPFWGF
101: QEGFWKWFSG VMDNALYPVL FLDYLKHSFP VLDHVAARVP ALLGITFSLT YLNYRGLHIV GFSAVLLAVF SLCPFLVMAL LAVPRIRPQR WLFVDFKKVN
201: WRGYFNTMFW NLNYWDKAST LAGEVESPGE TFPKALFGAV LLVMGSYLIP LTAGTGALSE SSSGEWSDGY FAEVGMLIGG VWLKGWIQAA AAMSNLGLFE
301: AEMSSDAFQL LGMSEIGMLP AFFAQRLSKY GTPTISILCS ATSQGVIFWS WLSFQEIIEF LNFLYALGML LEFAAFVKLR IKKPDLNRPY RIPLNTFGTL
401: LLCLPPSLLV ILVMVLAAPK TFLISGVIIV VGFCLYPFLE LVKEKRWARF IPEDPRRQVL GVQTESQLDE EHGDESSASL LP

Best Arabidopsis Sequence Match ( AT3G19553.1 )
(BLAST)

001: MGEEETIVND ENSSKPKPSP KLTLLPLVFL IFYEVSGGPF GVEDSVKSGG GPLLALLGFL IFPLIWSIPE ALVTAELATS FPENGGYVVW ISSAFGPFWG
101: FQEGFWKWFS GVMDNALYPV LFLDYLKHSF PVLDHVAARV PALLVITFSL TYLNYRGLHI VGFSAVVLAV FSLCPFVVMA LLAVPNIRPK RWLFVDTQKI
201: NWRGYFNTMF WNLNYWDKAS TLAGEVDRPG KTFPKALFGA VLLVMGSYLI PLMAGTGALS SSTSGEWSDG YFAEVGMLIG GVWLKGWIQA AAAMSNLGLF
301: EAEMSSDAFQ LLGMSEIGML PAFFAQRSKY GTPTISILCS ATGVIFLSWM SFQEIIEFLN FLYALGMLLE FAAFVKLRIK KPDLHRPYRV PLNTFGVSML
401: CLPPSLLVIL VMVLAAPKTF LISGVIIVLG FCLYPFLTLV KEKQWARFIP EETRPVSGVS SESQLDEEHG DESAASLLP

Arabidopsis Description

PUT5 [Source:UniProtKB/TrEMBL;Acc:A0A178VGC5]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.