CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane, golgi, vacuole

Predictor Summary:

nucleus 1
golgi 2
extracellular 1
endoplasmic reticulum 1
vacuole 2
plasma membrane 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	golgi, plasma membrane, vacuole
Any Predictor:	golgi, nucleus, plasma membrane, vacuole
BaCelLo:	nucleus
MultiLoc:	golgi
PProwler:	secretory
WoLF PSORT:	vacuole
YLoc:	plasma membrane

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra038217.1-P	Field mustard	golgi, plasma membrane, vacuole	98.33	98.33
CDY42190	Canola	golgi, plasma membrane, vacuole	98.12	98.12
AT3G19553.1	Thale cress	plasma membrane	92.26	92.07
CDY46166	Canola	plasma membrane	92.26	92.07
CDX99215	Canola	plasma membrane	92.47	91.7
VIT_03s0091g00600.t01	Wine grape	plasma membrane	77.41	73.41
KRH77938	Soybean	plasma membrane	72.18	71.43
PGSC0003DMT400013939	Potato	plasma membrane	71.97	69.35
Solyc10g049640.1.1	Tomato	plasma membrane	70.08	68.37
GSMUA_Achr2P13450_001	Banana	plasma membrane	50.63	65.41
GSMUA_Achr4P28240_001	Banana	plasma membrane	53.97	62.77
TraesCS5D01G085800.1	Wheat	golgi, plasma membrane, vacuole	58.37	57.64
EES16229	Sorghum	plasma membrane	59.2	57.64
CDY63076	Canola	endoplasmic reticulum, plasma membrane, vacuole	45.19	57.6
TraesCS5A01G073000.1	Wheat	golgi, plasma membrane, vacuole	58.37	57.53
TraesCS5B01G079100.1	Wheat	golgi, plasma membrane, vacuole	58.37	57.53
Zm00001d030832_P001	Maize	plasma membrane	59.41	57.14
Os12t0580400-01	Rice	plasma membrane	57.74	55.65
CDY12285	Canola	golgi, peroxisome, plasma membrane, plastid	56.07	53.82
CDY12286	Canola	plasma membrane	43.1	52.69
CDX70141	Canola	plasma membrane, plastid	52.72	51.75
CDX98852	Canola	plasma membrane, plastid	52.93	51.74
HORVU5Hr1G019110.1	Barley	plastid	58.58	50.54
CDX75722	Canola	plasma membrane	26.36	46.67
CDY23626	Canola	plasma membrane	46.23	46.53
CDX97502	Canola	plasma membrane	46.03	46.12
CDX82530	Canola	plasma membrane	45.82	45.91
CDX75721	Canola	plasma membrane	45.61	45.7

Protein Annotations

Gene3D:1.20.1740.10	MapMan:24.2.3.5.1	GO:A0A078JW62	UniProt:A0A078JW62	InterPro:AA/rel_permease1	EnsemblPlants:CDY69762
ProteinID:CDY69762	ProteinID:CDY69762.1	GO:GO:0003333	GO:GO:0003674	GO:GO:0005215	GO:GO:0005575
GO:GO:0006810	GO:GO:0008150	GO:GO:0015171	GO:GO:0016020	GO:GO:0016021	GO:GO:0022857
GO:GO:0055085	EnsemblPlantsGene:GSBRNA2T00092152001	PFAM:PF13520	PIRSF:PIRSF006060	PANTHER:PTHR11785	PANTHER:PTHR11785:SF338
TMHMM:TMhelix	UniParc:UPI0004EEA014	SEG:seg	:	:	:

Description

BnaCnng65210DBnaCnng65210D protein [Source:UniProtKB/TrEMBL;Acc:A0A078JW62]

Coordinates

chrLK040248:-:1604..3755

Molecular Weight (calculated)

52984.2 Da

IEP (calculated)

5.271

GRAVY (calculated)

0.503

Length

478 amino acids

Sequence
(BLAST)

001: MGEEIIQNDE NSAKTKPSPK LTLLPLVFLI FYEVSGGPFG VEDSVKSGGG PLLALLGFLI FPLIWSIPEA LVTAELATSF PENGGYVVWI SSAFGPFWGF
101: QEGFWKWFSG VMDNALYPVL FLDYLKHSFP VLDHAAARVP ALLVLTFSLT YLNYRGLHII GFSAVLLAVF SLCPFVVMAL LAVPRISPKR WLFVDFKKVN
201: WRGYFNTMFW NLNYWDKAST LAGEVESPGK TFPKALFGAV LLVMGSYLIP LMAGTGALSE SSSGEWSDGY FSEVGMLIGG VWLKGWIQAA SAMSNLGLFE
301: AEMSSDAFQL LGMSEMGMLP AFFAQRSKYG TPTISILCSA TGVIFLSWMS FQEIIEFLNF LYALGMLLEF AAFVKLRIKK PDLNRPYRVP LNTFGTLMLC
401: LPPSLLLILV MVLATVKTFF VSGVIIVVGF CLHPFLKIVK EKRWARFIPE ETRPVLEVPS ESQLDEEHGD ESSASLLP

Best Arabidopsis Sequence Match ( AT3G19553.1 )
(BLAST)

001: MGEEETIVND ENSSKPKPSP KLTLLPLVFL IFYEVSGGPF GVEDSVKSGG GPLLALLGFL IFPLIWSIPE ALVTAELATS FPENGGYVVW ISSAFGPFWG
101: FQEGFWKWFS GVMDNALYPV LFLDYLKHSF PVLDHVAARV PALLVITFSL TYLNYRGLHI VGFSAVVLAV FSLCPFVVMA LLAVPNIRPK RWLFVDTQKI
201: NWRGYFNTMF WNLNYWDKAS TLAGEVDRPG KTFPKALFGA VLLVMGSYLI PLMAGTGALS SSTSGEWSDG YFAEVGMLIG GVWLKGWIQA AAAMSNLGLF
301: EAEMSSDAFQ LLGMSEIGML PAFFAQRSKY GTPTISILCS ATGVIFLSWM SFQEIIEFLN FLYALGMLLE FAAFVKLRIK KPDLHRPYRV PLNTFGVSML
401: CLPPSLLVIL VMVLAAPKTF LISGVIIVLG FCLYPFLTLV KEKQWARFIP EETRPVSGVS SESQLDEEHG DESAASLLP

Arabidopsis Description

PUT5 [Source:UniProtKB/TrEMBL;Acc:A0A178VGC5]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.