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Canola
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Canola
Subcellular Localization
min:
: max

 
Winner_takes_all: plasma membrane, endoplasmic reticulum, vacuole

Predictor Summary:
  • nucleus 1
  • endoplasmic reticulum 4
  • extracellular 3
  • golgi 3
  • plasma membrane 4
  • vacuole 4
Predictors GFP MS/MS Papers
Winner Takes All:endoplasmic reticulum, plasma membrane, vacuole
Any Predictor:nucleus, secretory
BaCelLo:nucleus
MultiLoc:endoplasmic reticulum
Predotar:secretory
PProwler:secretory
TargetP:secretory
WoLF PSORT:vacuole
YLoc:plasma membrane
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDY12286 Canola plasma membrane 87.73 84.14
AT1G31820.1 Thale cress plasma membrane 84.0 65.35
CDY12285 Canola golgi, peroxisome, plasma membrane, plastid 82.93 62.45
VIT_02s0033g01310.t01 Wine grape plasma membrane 73.87 57.59
PGSC0003DMT400067464 Potato plasma membrane 71.47 57.27
GSMUA_Achr4P11590_001 Banana plasma membrane 47.73 57.19
Solyc08g078100.1.1 Tomato plasma membrane 70.93 56.84
VIT_02s0033g01320.t01 Wine grape plasma membrane 69.07 54.76
KRH76400 Soybean plasma membrane 70.93 54.73
GSMUA_Achr9P23200_001 Banana plasma membrane 45.33 54.66
PGSC0003DMT400047497 Potato plasma membrane 68.27 54.58
KRH07711 Soybean plasma membrane 68.27 54.12
CDX98852 Canola plasma membrane, plastid 68.27 52.35
CDX70141 Canola plasma membrane, plastid 67.73 52.16
KRH39685 Soybean cytosol, peroxisome, plasma membrane, plastid 71.47 51.94
GSMUA_Achr1P27820_001 Banana plasma membrane 58.93 51.16
TraesCS6D01G245700.1 Wheat plasma membrane 66.13 49.8
TraesCS5D01G028100.1 Wheat plasma membrane 65.6 49.7
TraesCS5A01G022700.1 Wheat mitochondrion, plasma membrane 65.6 49.7
TraesCS5B01G019600.1 Wheat mitochondrion, plasma membrane 65.33 49.49
Zm00001d024516_P001 Maize plasma membrane 64.8 49.29
EES13409 Sorghum plasma membrane 64.8 49.29
HORVU5Hr1G006170.3 Barley golgi, plasma membrane 65.6 48.81
Solyc08g005540.1.1 Tomato cytosol, peroxisome, plasma membrane 68.27 48.3
Solyc08g075710.2.1 Tomato plastid 68.53 48.13
Os02t0700500-01 Rice cytosol, peroxisome, plasma membrane 67.73 47.83
Zm00001d017728_P001 Maize plasma membrane 65.6 46.86
TraesCS6A01G269200.2 Wheat plasma membrane 65.87 46.78
TraesCS6B01G296500.2 Wheat plasma membrane 65.33 46.14
OQU85562 Sorghum peroxisome, plasma membrane, vacuole 65.87 45.91
CDY42190 Canola golgi, plasma membrane, vacuole 58.4 45.82
CDY46166 Canola plasma membrane 57.87 45.3
CDX99215 Canola plasma membrane 58.13 45.23
CDY69762 Canola golgi, plasma membrane, vacuole 57.6 45.19
Os03t0576900-01 Rice plastid 65.07 44.36
HORVU6Hr1G068230.1 Barley plastid 64.53 42.09
CDX75722 Canola plasma membrane 29.6 41.11
CDY23626 Canola plasma membrane 46.93 37.05
CDX97502 Canola plasma membrane 46.93 36.9
CDX82530 Canola plasma membrane 46.13 36.27
CDX75721 Canola plasma membrane 46.13 36.27
Protein Annotations
Gene3D:1.20.1740.10MapMan:24.2.3.5.1GO:A0A078JBH0UniProt:A0A078JBH0InterPro:AA/rel_permease1EnsemblPlants:CDY63076
ProteinID:CDY63076ProteinID:CDY63076.1GO:GO:0003333GO:GO:0003674GO:GO:0005215GO:GO:0005575
GO:GO:0006810GO:GO:0008150GO:GO:0015171GO:GO:0016020GO:GO:0016021GO:GO:0022857
GO:GO:0055085EnsemblPlantsGene:GSBRNA2T00037905001PFAM:PF13520PIRSF:PIRSF006060PANTHER:PTHR11785PANTHER:PTHR11785:SF338
TMHMM:TMhelixUniParc:UPI0004EED288SEG:seg:::
Description
BnaCnng41370DBnaCnng41370D protein [Source:UniProtKB/TrEMBL;Acc:A0A078JBH0]
Coordinates
chrLK034242:-:15838..23505
Molecular Weight (calculated)
40708.9 Da
IEP (calculated)
4.688
GRAVY (calculated)
0.775
Length
375 amino acids
Sequence
(BLAST)
001: MLPLIFLIFY EVSGGPFGVE DSVNAAGPLL ALLGFVIFPF IWSIPEALIT AEMGTMFPEN GGYVVWVSSA LGPFWGFQQG WMKWLSGVID NALYPVLFLD
101: YLKSGIPALG SGLPRVAAIL VLTLMLTYLN YRGLTIVGWA AVAMGVFSIL PFAVMVSTLA GEVANPKQTL PKALCYSVIF VTLSNFLPLL SGTGAIPLNR
201: ELWTDGFLAE VAGTIGGGWL RVWVQVAAAT SNMGMFIAEM SSDSFQLLGM AELGMLPEDI VAAENMPYCG GMVLEFVAFV RMRVKHPAAS RPYKIPAGTV
301: GSVLICVPPI VLICLVVVLL TLKVAVVSFV MVMVGLLMKP CLDHMDRKRW VQFSVSCDLP EFQKESQEME ESLLR
Best Arabidopsis Sequence Match ( AT1G31820.1 )
(BLAST)
001: MGDYNMNEFA YGNLYDDDDG DVGGSSKEGN NSIQKVSMLP LVFLIFYEVS GGPFGAEGSV NAAGPLLALL GFVIFPFIWC IPEALITAEM STMFPINGGF
101: VVWVSSALGT FWGFQVGWMK WLCGVIDNAL YPVLFLDYLK SAVPALATGL PRVASILILT LLLTYLNYRG LTIVGWTAVF MGVFSMLPFA VMSLVSIPQL
201: EPSRWLVMDL GNVNWNLYLN TLLWNLNYWD SVSTLAGEVA NPKKTLPKAL CYGVIFVALS NFLPLLSGTG AIPLDRELWT DGYLAEVAKA IGGGWLQLWV
301: QAAAATSNMG MFLAEMSSDS FQLLGMAELG ILPEIFAQRS RYGTPLLGIL FSASGVLLLS GLSFQEIIAA ENLLYCGGMI LEFIAFVRLR KKHPAASRPY
401: KIPVGTVGSI LICVPPIVLI CLVIVLSTIK VALVSFVMVV IGFLMKPCLN HMDGKKWVKF SVCSDLAEFQ KENLDCEESL LR
Arabidopsis Description
Probable polyamine transporter At1g31820 [Source:UniProtKB/Swiss-Prot;Acc:Q9C6S4]
SUBAcon: [plasma membrane]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.