Factsheet for PGSC0003DMT400067464

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

nucleus 1
plasma membrane 5
extracellular 1
endoplasmic reticulum 1
vacuole 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	nucleus, secretory
BaCelLo:	nucleus
MultiLoc:	plasma membrane
Plant-mPloc:	plasma membrane
PProwler:	secretory
WoLF PSORT:	plasma membrane
YLoc:	plasma membrane

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc08g078100.1.1	Tomato	plasma membrane	97.22	97.22
PGSC0003DMT400047497	Potato	plasma membrane	84.4	84.22
KRH07711	Soybean	plasma membrane	79.7	78.86
KRH76400	Soybean	plasma membrane	80.77	77.78
VIT_02s0033g01310.t01	Wine grape	plasma membrane	79.7	77.55
VIT_02s0033g01320.t01	Wine grape	plasma membrane	75.0	74.21
GSMUA_Achr4P11590_001	Banana	plasma membrane	48.93	73.16
KRH39685	Soybean	cytosol, peroxisome, plasma membrane, plastid	80.13	72.67
GSMUA_Achr9P23200_001	Banana	plasma membrane	48.08	72.35
CDY63076	Canola	endoplasmic reticulum, plasma membrane, vacuole	57.27	71.47
CDY12285	Canola	golgi, peroxisome, plasma membrane, plastid	75.64	71.08
Bra023210.1-P	Field mustard	golgi, peroxisome, plasma membrane, plastid	75.43	70.88
AT1G31830.1	Thale cress	golgi, mitochondrion, plasma membrane	74.79	70.71
PGSC0003DMT400008784	Potato	plasma membrane	69.23	69.68
GSMUA_Achr1P27820_001	Banana	plasma membrane	64.1	69.44
AT5G05630.1	Thale cress	plasma membrane	71.37	68.16
Zm00001d024516_P001	Maize	plasma membrane	71.58	67.95
Bra023209.1-P	Field mustard	plasma membrane	65.17	67.48
TraesCS5A01G022700.1	Wheat	mitochondrion, plasma membrane	70.94	67.07
AT1G31820.1	Thale cress	plasma membrane	69.02	67.01
TraesCS5D01G028100.1	Wheat	plasma membrane	70.73	66.87
TraesCS5B01G019600.1	Wheat	mitochondrion, plasma membrane	70.3	66.46
EES13409	Sorghum	plasma membrane	69.87	66.33
TraesCS6D01G245700.1	Wheat	plasma membrane	70.51	66.27
CDY12286	Canola	plasma membrane	54.91	65.73
CDX70141	Canola	plasma membrane, plastid	68.38	65.71
CDX98852	Canola	plasma membrane, plastid	68.59	65.64
HORVU5Hr1G006170.3	Barley	golgi, plasma membrane	70.51	65.48
Bra009122.1-P	Field mustard	plasma membrane	67.73	64.56
Zm00001d017728_P001	Maize	plasma membrane	72.01	64.19
Os02t0700500-01	Rice	cytosol, peroxisome, plasma membrane	71.58	63.09
TraesCS6A01G269200.2	Wheat	plasma membrane	70.51	62.5
OQU85562	Sorghum	peroxisome, plasma membrane, vacuole	71.79	62.45
TraesCS6B01G296500.2	Wheat	plasma membrane	69.44	61.21
Os03t0576900-01	Rice	plastid	70.51	60.0
HORVU6Hr1G068230.1	Barley	plastid	69.87	56.87
PGSC0003DMT400013939	Potato	plasma membrane	53.42	50.4
PGSC0003DMT400082047	Potato	plasma membrane	45.09	44.14
PGSC0003DMT400028298	Potato	mitochondrion, plasma membrane	44.23	44.04
PGSC0003DMT400082048	Potato	plasma membrane	44.23	43.76

Protein Annotations

Gene3D:1.20.1740.10	EntrezGene:102597466	MapMan:24.2.3.5.1	InterPro:AA/rel_permease1	GO:GO:0003333	GO:GO:0003674
GO:GO:0005215	GO:GO:0005575	GO:GO:0006810	GO:GO:0008150	GO:GO:0015171	GO:GO:0016020
GO:GO:0016021	GO:GO:0022857	GO:GO:0055085	UniProt:M1CHA9	PFAM:PF13520	EnsemblPlantsGene:PGSC0003DMG400026227
PGSC:PGSC0003DMG400026227	EnsemblPlants:PGSC0003DMT400067464	PIRSF:PIRSF006060	PANTHER:PTHR11785	PANTHER:PTHR11785:SF338	TMHMM:TMhelix
UniParc:UPI0002957C1B	RefSeq:XP_006359232.1	SEG:seg	:	:	:

Description

Amino acid transporter [Source:PGSC_GENE;Acc:PGSC0003DMG400026227]

Coordinates

chr8:+:51232328..51237121

Molecular Weight (calculated)

51601.1 Da

IEP (calculated)

5.213

GRAVY (calculated)

0.704

Length

468 amino acids

Sequence
(BLAST)

001: MGEFDDGEYA GINEVTSPRE NNARKVSVLP LLFLIFYEVS GGPFGVEDTV RAAGPLLALL GFLVFPFIWS VPEALITAEM GTMFPENGGY VVWVSSALGP
101: YWGFQLGWMK WLSGVIDNAL YPVLFLDYLK SAIPALGGGL PRVLAILALT VVLTYMNYRG LTIVGWVAVS LGILSILPFV VMGLISIPKL KPSRWLVVDV
201: QSVDWNLYLN TLFWNLNYWD SISTLAGEVH NPKKTLPKAL FYAVILVVLS YFFPLLIGTG AVPLERDLWT DGYFSDIAKI LGGVWLRVWI QGAAATSNMG
301: MFVAEMSSDS FQLLGMAERG LLPEFFSKRS RYGTPLFGIL FLASGVILLS WLSFQEIVAA ENFLYCFGMI LEFIAFVLLR IKSPHALRPF KIPGGTVGAI
401: LLCIPPTILI CVVLALSSFE VMVVSLAAVA IGLVMQPCLK LIENKRWLKF SVSSDLPDDI TTHEPLLR

Best Arabidopsis Sequence Match ( AT1G31830.1 )
(BLAST)

001: MQKRRIITVN PSASIEMSQY ENNEVPYSSV GADEVPSSPP KATDKIRKVS MLPLVFLIFY EVSGGPFGVE DSVNAAGPLL ALLGFVIFPF IWSIPEALIT
101: AEMGTMYPEN GGYVVWVSSA LGPFWGFQQG WMKWLSGVID NALYPVLFLD YLKSGVPALG SGLPRVASIL VLTILLTYLN YRGLTIVGWV AVLMGVFSIL
201: PFAVMGLISI PQLEPSRWLV MDLGNVNWNL YLNTLFWNLN YWDSISTLAG EVENPNHTLP KALFYGVILV ACSYIFPLLA GIGAIPLERE KWTDGYFSDV
301: AKALGGAWLR WWVQAAAATS NMGMFIAEMS SDSFQLLGMA ERGMLPEFFA KRSRYGTPLL GILFSASGVV LLSWLSFQEI VAAENLLYCV GMILEFIAFV
401: RMRMKHPAAS RPYKIPIGTT GSILMCIPPT ILICAVVALS SLKVAAVSIV MMIIGFLIHP LLNHMDRKRW VKFSISSDLP DLQQQTREYE ETLIR

Arabidopsis Description

Probable polyamine transporter At1g31830 [Source:UniProtKB/Swiss-Prot;Acc:Q9C6S5]
SUBAcon: [mitochondrion,plasma membrane,golgi]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.