Factsheet for VIT_02s0033g01320.t01

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

nucleus 1
plasma membrane 4
extracellular 1
golgi 1
endoplasmic reticulum 1
vacuole 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	nucleus, secretory
BaCelLo:	nucleus
MultiLoc:	plasma membrane
Plant-mPloc:	plasma membrane
PProwler:	secretory
WoLF PSORT:	vacuole
YLoc:	plasma membrane

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_02s0033g01310.t01	Wine grape	plasma membrane	85.84	84.41
PGSC0003DMT400067464	Potato	plasma membrane	74.21	75.0
Solyc08g078100.1.1	Tomato	plasma membrane	74.0	74.79
PGSC0003DMT400047497	Potato	plasma membrane	72.09	72.71
GSMUA_Achr4P11590_001	Banana	plasma membrane	47.99	72.52
KRH07711	Soybean	plasma membrane	70.19	70.19
GSMUA_Achr9P23200_001	Banana	plasma membrane	45.67	69.45
VIT_03s0038g02860.t01	Wine grape	plasma membrane	70.82	69.21
CDY63076	Canola	endoplasmic reticulum, plasma membrane, vacuole	54.76	69.07
KRH76400	Soybean	plasma membrane	70.82	68.93
AT1G31830.1	Thale cress	golgi, mitochondrion, plasma membrane	71.46	68.28
CDY12285	Canola	golgi, peroxisome, plasma membrane, plastid	71.46	67.87
Bra023210.1-P	Field mustard	golgi, peroxisome, plasma membrane, plastid	71.25	67.67
GSMUA_Achr1P27820_001	Banana	plasma membrane	60.68	66.44
AT5G05630.1	Thale cress	plasma membrane	68.08	65.71
Bra023209.1-P	Field mustard	plasma membrane	62.37	65.27
CDX98852	Canola	plasma membrane, plastid	67.44	65.24
CDX70141	Canola	plasma membrane, plastid	67.02	65.09
Bra009122.1-P	Field mustard	plasma membrane	67.23	64.77
KRH39685	Soybean	cytosol, peroxisome, plasma membrane, plastid	70.4	64.53
AT1G31820.1	Thale cress	plasma membrane	65.75	64.52
Solyc08g005540.1.1	Tomato	cytosol, peroxisome, plasma membrane	71.67	63.96
CDY12286	Canola	plasma membrane	52.85	63.94
Zm00001d024516_P001	Maize	plasma membrane	66.38	63.69
EES13409	Sorghum	plasma membrane	65.96	63.29
TraesCS5A01G022700.1	Wheat	mitochondrion, plasma membrane	65.75	62.83
TraesCS5B01G019600.1	Wheat	mitochondrion, plasma membrane	65.75	62.83
Solyc08g075710.2.1	Tomato	plastid	70.82	62.73
TraesCS5D01G028100.1	Wheat	plasma membrane	65.33	62.42
HORVU5Hr1G006170.3	Barley	golgi, plasma membrane	65.96	61.9
TraesCS6D01G245700.1	Wheat	plasma membrane	65.12	61.85
Zm00001d017728_P001	Maize	plasma membrane	65.75	59.24
Os02t0700500-01	Rice	cytosol, peroxisome, plasma membrane	65.33	58.19
TraesCS6A01G269200.2	Wheat	plasma membrane	64.9	58.14
OQU85562	Sorghum	peroxisome, plasma membrane, vacuole	65.75	57.81
TraesCS6B01G296500.2	Wheat	plasma membrane	64.27	57.25
Os03t0576900-01	Rice	plastid	65.54	56.36
HORVU6Hr1G068230.1	Barley	plastid	64.69	53.22
VIT_03s0091g00600.t01	Wine grape	plasma membrane	54.33	50.99
VIT_06s0004g00790.t01	Wine grape	plasma membrane	45.24	45.05
VIT_06s0004g00800.t01	Wine grape	plasma membrane	44.19	43.27

Protein Annotations

Gene3D:1.20.1740.10	EntrezGene:100258009	wikigene:100258009	MapMan:24.2.3.5.1	InterPro:AA/rel_permease1	ProteinID:CCB60367
ProteinID:CCB60367.1	ncoils:Coil	UniProt:F6I0A1	EMBL:FN596505	GO:GO:0003333	GO:GO:0003674
GO:GO:0005215	GO:GO:0005575	GO:GO:0005623	GO:GO:0005886	GO:GO:0005887	GO:GO:0006810
GO:GO:0008150	GO:GO:0015171	GO:GO:0015179	GO:GO:0015297	GO:GO:0016020	GO:GO:0016021
GO:GO:0022857	GO:GO:0055085	GO:GO:1902475	EntrezGene:LOC100258009	wikigene:LOC100258009	PFAM:PF13520
PIRSF:PIRSF006060	PANTHER:PTHR11785	PANTHER:PTHR11785:SF338	TMHMM:TMhelix	UniParc:UPI000210971B	ArrayExpress:VIT_02s0033g01320
EnsemblPlantsGene:VIT_02s0033g01320	EnsemblPlants:VIT_02s0033g01320.t01	RefSeq:XP_002263455	RefSeq:XP_002263455.1	SEG:seg	:

Description

No Description!

Coordinates

chr2:-:16751116..16752541

Molecular Weight (calculated)

51814.6 Da

IEP (calculated)

7.617

GRAVY (calculated)

0.726

Length

473 amino acids

Sequence
(BLAST)

001: MGECKGVESV GVDVDEVAPL GVDNFKKVSV LPLVFLIFYE VSGGPFGTED VVKAAGPLLA LLGFLIFPFI WSIPEALITA EMGTMFPENG GYVVWVSSAL
101: GPYWGFQLGW MKWFSGVIDN ALYPVLFLDY LCSTVPALSS GLPKIAVVLA LIVVLTYMNY RGLTIVGRAA IVLGLFSILP FVIMGLLSIP KLKPSRWLVV
201: EKDVDWRLYL TKLFWNLNYW DSISTIAGEV DNPKKTLPIA LFCALILVVR SYFFPLLIGT GALSLNREAW TDGHFSNVAK MIGGVWLSWW ITGAAAASNL
301: GMFIAEMSSD SFQLLGMAER GMLPSVFAKR SRYGTPLVGI LLSASGALLL SWMSFQETIA AENFLYCFGM ILEFIAFVRL RIKYPVASRP YKIPLGTIGS
401: ILMCIPPTIL ICITVALSSL KVVVVSLTVV IIGLLVQPCL KCAERKKWLK FSVSSNLPDL NGENNENVVP LVD

Best Arabidopsis Sequence Match ( AT1G31830.1 )
(BLAST)

001: MQKRRIITVN PSASIEMSQY ENNEVPYSSV GADEVPSSPP KATDKIRKVS MLPLVFLIFY EVSGGPFGVE DSVNAAGPLL ALLGFVIFPF IWSIPEALIT
101: AEMGTMYPEN GGYVVWVSSA LGPFWGFQQG WMKWLSGVID NALYPVLFLD YLKSGVPALG SGLPRVASIL VLTILLTYLN YRGLTIVGWV AVLMGVFSIL
201: PFAVMGLISI PQLEPSRWLV MDLGNVNWNL YLNTLFWNLN YWDSISTLAG EVENPNHTLP KALFYGVILV ACSYIFPLLA GIGAIPLERE KWTDGYFSDV
301: AKALGGAWLR WWVQAAAATS NMGMFIAEMS SDSFQLLGMA ERGMLPEFFA KRSRYGTPLL GILFSASGVV LLSWLSFQEI VAAENLLYCV GMILEFIAFV
401: RMRMKHPAAS RPYKIPIGTT GSILMCIPPT ILICAVVALS SLKVAAVSIV MMIIGFLIHP LLNHMDRKRW VKFSISSDLP DLQQQTREYE ETLIR

Arabidopsis Description

Probable polyamine transporter At1g31830 [Source:UniProtKB/Swiss-Prot;Acc:Q9C6S5]
SUBAcon: [golgi,plasma membrane,mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.