Factsheet for Solyc08g005540.1.1

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome, cytosol, plasma membrane

Predictor Summary:

nucleus 1
cytosol 1
plasma membrane 2
mitochondrion 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400047497	Potato	plasma membrane	85.28	96.38
Solyc08g078100.1.1	Tomato	plasma membrane	73.96	83.76
KRH76400	Soybean	plasma membrane	70.94	77.37
Solyc08g075710.2.1	Tomato	plastid	77.74	77.15
KRH07711	Soybean	plasma membrane	68.11	76.32
VIT_02s0033g01310.t01	Wine grape	plasma membrane	68.49	75.47
KRH39685	Soybean	cytosol, peroxisome, plasma membrane, plastid	70.94	72.87
VIT_02s0033g01320.t01	Wine grape	plasma membrane	63.96	71.67
GSMUA_Achr4P11590_001	Banana	plasma membrane	41.7	70.61
CDY12285	Canola	golgi, peroxisome, plasma membrane, plastid	66.04	70.28
AT1G31830.1	Thale cress	golgi, mitochondrion, plasma membrane	65.47	70.1
Bra023210.1-P	Field mustard	golgi, peroxisome, plasma membrane, plastid	65.85	70.08
GSMUA_Achr9P23200_001	Banana	plasma membrane	40.57	69.13
CDY63076	Canola	endoplasmic reticulum, plasma membrane, vacuole	48.3	68.27
GSMUA_Achr1P27820_001	Banana	plasma membrane	55.47	68.06
TraesCS6D01G245700.1	Wheat	plasma membrane	63.77	67.87
AT5G05630.1	Thale cress	plasma membrane	62.26	67.35
Solyc01g111800.2.1	Tomato	plasma membrane	58.49	67.25
Zm00001d024516_P001	Maize	plasma membrane	62.45	67.14
EES13409	Sorghum	plasma membrane	62.08	66.73
CDX98852	Canola	plasma membrane, plastid	60.75	65.85
CDX70141	Canola	plasma membrane, plastid	60.38	65.71
Zm00001d017728_P001	Maize	plasma membrane	64.91	65.52
TraesCS5A01G022700.1	Wheat	mitochondrion, plasma membrane	61.13	65.45
TraesCS5B01G019600.1	Wheat	mitochondrion, plasma membrane	60.75	65.05
AT1G31820.1	Thale cress	plasma membrane	59.06	64.94
Bra009122.1-P	Field mustard	plasma membrane	60.0	64.77
TraesCS5D01G028100.1	Wheat	plasma membrane	60.38	64.65
Bra023209.1-P	Field mustard	plasma membrane	55.09	64.6
TraesCS6A01G269200.2	Wheat	plasma membrane	64.34	64.58
HORVU5Hr1G006170.3	Barley	golgi, plasma membrane	61.13	64.29
Os02t0700500-01	Rice	cytosol, peroxisome, plasma membrane	64.34	64.22
OQU85562	Sorghum	peroxisome, plasma membrane, vacuole	64.91	63.94
Solyc09g092420.1.1	Tomato	plasma membrane	34.15	63.51
TraesCS6B01G296500.2	Wheat	plasma membrane	63.58	63.47
CDY12286	Canola	plasma membrane	45.66	61.89
Os03t0576900-01	Rice	plastid	61.7	59.45
HORVU6Hr1G068230.1	Barley	plastid	64.15	59.13
Solyc10g049640.1.1	Tomato	plasma membrane	46.04	49.8
Solyc01g034080.1.1	Tomato	plasma membrane	40.0	45.11
Solyc01g005920.2.1	Tomato	plasma membrane	40.38	45.05

Protein Annotations

Gene3D:1.20.1740.10	MapMan:24.2.3.5.1	InterPro:AA/rel_permease1	GO:GO:0003333	GO:GO:0003674	GO:GO:0005215
GO:GO:0005575	GO:GO:0005623	GO:GO:0005886	GO:GO:0005887	GO:GO:0006810	GO:GO:0008150
GO:GO:0015171	GO:GO:0015179	GO:GO:0015297	GO:GO:0016020	GO:GO:0016021	GO:GO:0022857
GO:GO:0055085	GO:GO:1902475	UniProt:K4CI45	PFAM:PF13520	PIRSF:PIRSF006060	PANTHER:PTHR11785
PANTHER:PTHR11785:SF338	EnsemblPlantsGene:Solyc08g005540.1	EnsemblPlants:Solyc08g005540.1.1	TMHMM:TMhelix	UniParc:UPI000276BA63	:

Description

No Description!

Coordinates

chr8:-:397461..402431

Molecular Weight (calculated)

58243.8 Da

IEP (calculated)

7.955

GRAVY (calculated)

0.472

Length

530 amino acids

Sequence
(BLAST)

001: MTVKSETKSS IEVPNAQQQV AVAEKKTSAL SSPTTAQNDK FVQNGDDQKV RDLPQKEAAI PMGECNNAEY IEINEVVSSS RANNDRKLSL LPLVFLIFYE
101: VSGGPFGVED TVHAAGPLLA LVGFLVFPII WSVPEALITA ELGTMFPENS GYVVWVSSAL GPYWGFQQGW VKWLSGVIDN ALYPVLFLDY LKSGVPALGG
201: GLPRVLAVIG ITLVLTYMNY RGLTIVGWVA VLLGVLSILP FVVMGLISIP KLKPTRWLAT DVHSVDWNLY LNTLFWNLNY WDSISTLVGE VRNPKKTLPK
301: ALFYAVILVV LSYFFPLLVG TGAVPLERDL WTDGYFSDIA KILGGVWLRW WIQGAAALSN MGTFVAEMSS DSFQLLGMAE RGMLPEFFAK RSRHGTPLVG
401: ILLSASGVLL LSWMSFQEIV AAENFLYCFG MILEFIAFVR LRIKFPNASR PFKIPGGTVG AIVLCIPPTI LVGIVLAFST VKVMIISLAA IAIGLVMQPC
501: LKHIEKKKWL KFSISPDLPD IHRDNGTLVH

Best Arabidopsis Sequence Match ( AT1G31830.1 )
(BLAST)

001: MQKRRIITVN PSASIEMSQY ENNEVPYSSV GADEVPSSPP KATDKIRKVS MLPLVFLIFY EVSGGPFGVE DSVNAAGPLL ALLGFVIFPF IWSIPEALIT
101: AEMGTMYPEN GGYVVWVSSA LGPFWGFQQG WMKWLSGVID NALYPVLFLD YLKSGVPALG SGLPRVASIL VLTILLTYLN YRGLTIVGWV AVLMGVFSIL
201: PFAVMGLISI PQLEPSRWLV MDLGNVNWNL YLNTLFWNLN YWDSISTLAG EVENPNHTLP KALFYGVILV ACSYIFPLLA GIGAIPLERE KWTDGYFSDV
301: AKALGGAWLR WWVQAAAATS NMGMFIAEMS SDSFQLLGMA ERGMLPEFFA KRSRYGTPLL GILFSASGVV LLSWLSFQEI VAAENLLYCV GMILEFIAFV
401: RMRMKHPAAS RPYKIPIGTT GSILMCIPPT ILICAVVALS SLKVAAVSIV MMIIGFLIHP LLNHMDRKRW VKFSISSDLP DLQQQTREYE ETLIR

Arabidopsis Description

Probable polyamine transporter At1g31830 [Source:UniProtKB/Swiss-Prot;Acc:Q9C6S5]
SUBAcon: [mitochondrion,plasma membrane,golgi]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.