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Barley
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Barley
Subcellular Localization
min:
: max

 
Winner_takes_all: plasma membrane, golgi

Predictor Summary:
  • plastid 1
  • golgi 2
  • extracellular 1
  • endoplasmic reticulum 1
  • vacuole 1
  • plasma membrane 2
Predictors GFP MS/MS Papers
Winner Takes All:golgi, plasma membrane
Any Predictor:plastid, secretory
iPSORT:plastid
MultiLoc:golgi
TargetP:secretory
YLoc:plasma membrane
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
TraesCS5D01G028100.1 Wheat plasma membrane 94.25 95.96
TraesCS5B01G019600.1 Wheat mitochondrion, plasma membrane 94.25 95.96
TraesCS5A01G022700.1 Wheat mitochondrion, plasma membrane 94.25 95.96
EES13409 Sorghum plasma membrane 85.91 87.83
Zm00001d024516_P001 Maize plasma membrane 84.72 86.61
Os03t0576900-01 Rice plastid 86.31 79.09
GSMUA_Achr4P11590_001 Banana plasma membrane 46.03 74.12
GSMUA_Achr9P23200_001 Banana plasma membrane 44.84 72.67
VIT_03s0038g02860.t01 Wine grape plasma membrane 69.05 71.9
VIT_02s0033g01310.t01 Wine grape plasma membrane 67.66 70.89
Solyc08g078100.1.1 Tomato plasma membrane 65.48 70.51
PGSC0003DMT400067464 Potato plasma membrane 65.48 70.51
KRG90652 Soybean plasma membrane 63.89 69.1
PGSC0003DMT400047497 Potato plasma membrane 64.29 69.08
KRH76400 Soybean plasma membrane 66.27 68.72
AT1G31830.1 Thale cress golgi, mitochondrion, plasma membrane 67.06 68.28
KRH07711 Soybean plasma membrane 63.69 67.86
CDY12285 Canola golgi, peroxisome, plasma membrane, plastid 66.67 67.47
Bra023210.1-P Field mustard golgi, peroxisome, plasma membrane, plastid 66.47 67.27
PGSC0003DMT400008784 Potato plasma membrane 61.9 67.1
Solyc01g111800.2.1 Tomato plasma membrane 61.31 67.03
VIT_02s0033g01320.t01 Wine grape plasma membrane 61.9 65.96
CDY63076 Canola endoplasmic reticulum, plasma membrane, vacuole 48.81 65.6
KRH39685 Soybean cytosol, peroxisome, plasma membrane, plastid 66.27 64.73
Solyc09g092420.1.1 Tomato plasma membrane 36.31 64.21
AT1G31820.1 Thale cress plasma membrane 60.52 63.28
AT5G05630.1 Thale cress plasma membrane 61.51 63.27
Bra023209.1-P Field mustard plasma membrane 56.15 62.61
Solyc08g075710.2.1 Tomato plastid 64.88 61.24
CDX98852 Canola plasma membrane, plastid 59.33 61.15
Solyc08g005540.1.1 Tomato cytosol, peroxisome, plasma membrane 64.29 61.13
CDX70141 Canola plasma membrane, plastid 58.73 60.78
CDY12286 Canola plasma membrane 46.63 60.1
Bra009122.1-P Field mustard plasma membrane 58.53 60.08
KRH36101 Soybean plasma membrane 31.94 59.85
HORVU6Hr1G068230.1 Barley plastid 63.29 55.48
HORVU5Hr1G019110.1 Barley plastid 48.81 44.4
HORVU3Hr1G005010.3 Barley vacuole 19.05 39.83
HORVU4Hr1G085290.4 Barley golgi, peroxisome, plasma membrane 38.89 38.66
HORVU7Hr1G106710.2 Barley cytosol, plasma membrane 39.09 38.33
KRH57856 Soybean cytosol 18.25 38.17
HORVU3Hr1G005120.1 Barley cytosol 12.5 30.43
Protein Annotations
EnsemblPlants:HORVU5Hr1G006170.3EnsemblPlantsGene:HORVU5Hr1G006170Gene3D:1.20.1740.10GO:GO:0003674GO:GO:0005215GO:GO:0005575
GO:GO:0006810GO:GO:0008150GO:GO:0016020GO:GO:0016021GO:GO:0022857GO:GO:0055085
InterPro:AA/rel_permease1PANTHER:PTHR11785PANTHER:PTHR11785:SF338PFAM:PF13520PIRSF:PIRSF006060SEG:seg
TMHMM:TMhelixUniParc:UPI000B4639D9UniProt:A0A287Q927MapMan:24.2.3.5.1::
Description
No Description!
Coordinates
chrchr5H:+:10158123..10159810
Molecular Weight (calculated)
55631.6 Da
IEP (calculated)
5.474
GRAVY (calculated)
0.612
Length
504 amino acids
Sequence
(BLAST)
001: FGFSCIFLNC ISRSTAVKRA NSAFLLMEDR VGVKYESVNE SKERKGGHGI PKVSMVPLVF LIFYEVSGGP FGIEDSVKAA GPLLAIVGFL LFAVIWSIPE
101: ALITAEMGTM FPENGGYVVW VSSALGPFWG FQQGWAKWLS GVIDNALYPV LFLDYVKSSV PALGGGLPRT FAVLILTVAL TYMNYRGLTI VGWVAVFLGV
201: FSLLPFFVMG LIAIPHIEPS RWFEMDLDNV NWGLYLNTLF WNLNYWDSIS TLAGEVENPK RTLPRALSYA LVLVVGGYLY PLITCTAAVP VVRESWTDGY
301: FSDIAKILGG FWLHSWIQAA AALSNMGNFV TEMSSDSYQL LGMAERGMLP EFFAKRSRYG TPLIGILFSA FGVVLLSWMS FQEIIAAENY LYCFGMILEF
401: IAFIKLRMTH PSTSRPFRIP LGTVGSVLMI IPPTILIVVV MVLASFKVMA VSVLAVLVGF ALQPALVYME KKRWLRFSVS EDLPDLLESS AAPPAEDDTT
501: PLVV
Best Arabidopsis Sequence Match ( AT1G31830.1 )
(BLAST)
001: MQKRRIITVN PSASIEMSQY ENNEVPYSSV GADEVPSSPP KATDKIRKVS MLPLVFLIFY EVSGGPFGVE DSVNAAGPLL ALLGFVIFPF IWSIPEALIT
101: AEMGTMYPEN GGYVVWVSSA LGPFWGFQQG WMKWLSGVID NALYPVLFLD YLKSGVPALG SGLPRVASIL VLTILLTYLN YRGLTIVGWV AVLMGVFSIL
201: PFAVMGLISI PQLEPSRWLV MDLGNVNWNL YLNTLFWNLN YWDSISTLAG EVENPNHTLP KALFYGVILV ACSYIFPLLA GIGAIPLERE KWTDGYFSDV
301: AKALGGAWLR WWVQAAAATS NMGMFIAEMS SDSFQLLGMA ERGMLPEFFA KRSRYGTPLL GILFSASGVV LLSWLSFQEI VAAENLLYCV GMILEFIAFV
401: RMRMKHPAAS RPYKIPIGTT GSILMCIPPT ILICAVVALS SLKVAAVSIV MMIIGFLIHP LLNHMDRKRW VKFSISSDLP DLQQQTREYE ETLIR
Arabidopsis Description
Probable polyamine transporter At1g31830 [Source:UniProtKB/Swiss-Prot;Acc:Q9C6S5]
SUBAcon: [mitochondrion,plasma membrane,golgi]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.