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Barley
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Barley
Subcellular Localization
min:
: max

 
Winner_takes_all: plastid

Predictor Summary:
  • plastid 3
  • mitochondrion 1
  • cytosol 1
Predictors GFP MS/MS Papers
Winner Takes All:plastid
Any Predictor:cytosol, mitochondrion, plastid
ChloroP:plastid
iPSORT:mitochondrion
MultiLoc:cytosol
TargetP:plastid
YLoc:plastid
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
TraesCS6D01G245700.1 Wheat plasma membrane 82.61 95.38
TraesCS6A01G269200.2 Wheat plasma membrane 86.26 93.94
TraesCS6B01G296500.2 Wheat plasma membrane 85.74 92.84
Os02t0700500-01 Rice cytosol, peroxisome, plasma membrane 74.78 80.98
Zm00001d017728_P001 Maize plasma membrane 73.04 80.0
OQU85562 Sorghum peroxisome, plasma membrane, vacuole 74.78 79.93
GSMUA_Achr1P27820_001 Banana plasma membrane 53.22 70.83
PGSC0003DMT400047497 Potato plasma membrane 57.57 70.58
Solyc08g078100.1.1 Tomato plasma membrane 57.04 70.09
PGSC0003DMT400067464 Potato plasma membrane 56.87 69.87
VIT_02s0033g01310.t01 Wine grape plasma membrane 58.09 69.44
KRH07711 Soybean plasma membrane 56.87 69.13
KRH76400 Soybean plasma membrane 58.09 68.72
KRG90652 Soybean plasma membrane 55.13 68.03
VIT_03s0038g02860.t01 Wine grape plasma membrane 56.35 66.94
KRH39685 Soybean cytosol, peroxisome, plasma membrane, plastid 58.43 65.12
CDY12285 Canola golgi, peroxisome, plasma membrane, plastid 56.35 65.06
Bra023210.1-P Field mustard golgi, peroxisome, plasma membrane, plastid 56.35 65.06
VIT_02s0033g01320.t01 Wine grape plasma membrane 53.22 64.69
CDY63076 Canola endoplasmic reticulum, plasma membrane, vacuole 42.09 64.53
AT1G31830.1 Thale cress golgi, mitochondrion, plasma membrane 55.48 64.44
Solyc08g005540.1.1 Tomato cytosol, peroxisome, plasma membrane 59.13 64.15
PGSC0003DMT400008784 Potato plasma membrane 51.65 63.87
HORVU5Hr1G006170.3 Barley golgi, plasma membrane 55.48 63.29
Solyc09g092420.1.1 Tomato plasma membrane 31.3 63.16
AT5G05630.1 Thale cress plasma membrane 53.74 63.06
Solyc01g111800.2.1 Tomato plasma membrane 50.43 62.91
CDX70141 Canola plasma membrane, plastid 52.87 62.42
Solyc08g075710.2.1 Tomato plastid 57.57 61.98
CDX98852 Canola plasma membrane, plastid 52.52 61.76
AT1G31820.1 Thale cress plasma membrane 51.48 61.41
Bra009122.1-P Field mustard plasma membrane 52.17 61.1
KRH36101 Soybean plasma membrane 28.0 59.85
Bra023209.1-P Field mustard plasma membrane 46.78 59.51
CDY12286 Canola plasma membrane 38.61 56.78
HORVU5Hr1G019110.1 Barley plastid 43.83 45.49
HORVU3Hr1G005010.3 Barley vacuole 17.91 42.74
HORVU7Hr1G106710.2 Barley cytosol, plasma membrane 35.65 39.88
HORVU4Hr1G085290.4 Barley golgi, peroxisome, plasma membrane 34.09 38.66
KRH57856 Soybean cytosol 16.0 38.17
HORVU3Hr1G005120.1 Barley cytosol 10.61 29.47
Protein Annotations
Gene3D:1.20.1740.10MapMan:24.2.3.5.1UniProt:A0A287UJ22InterPro:AA/rel_permease1GO:GO:0003674GO:GO:0005215
GO:GO:0005575GO:GO:0006810GO:GO:0008150GO:GO:0015203GO:GO:0015846GO:GO:0016020
GO:GO:0016021GO:GO:0022857GO:GO:0055085EnsemblPlantsGene:HORVU6Hr1G068230EnsemblPlants:HORVU6Hr1G068230.1PFAM:PF13520
PIRSF:PIRSF006060PANTHER:PTHR11785PANTHER:PTHR11785:SF434TMHMM:TMhelixUniParc:UPI000B47CCA7SEG:seg
Description
No Description!
Coordinates
chrchr6H:-:472376688..472384461
Molecular Weight (calculated)
61521.1 Da
IEP (calculated)
6.532
GRAVY (calculated)
0.384
Length
575 amino acids
Sequence
(BLAST)
001: GTDWKDPSLN QSHLFAKLSA ASIHSTSLSR NNNWDSRGTR SQTGRRRNRE SMGSVERSEV ALSSLPPPQP PPPPVAAPAG AGSADAGQEK PAQNGGPATG
101: AAPAMGEEGT EYRGLPGGAP APSPASLSIV PLIFIIFYEV SGGPFGIEDS VGAAGPLLAI AGFLALPVIW SVPEALITAE LGTMFPENSG YVVWVASALG
201: PYWGFQQGWM KWLSGVIDNA LYPVLFLDYL KSGVPALGGG APRTVAVLGL TALLTLLNYR GLTVVGWAAI CLGVFSLLPF LVMGFISIPK LRPARWLEVD
301: LHNVDWNLYL NTLFWNLNYW DSISTLSGEI KNTAKTLPKA LFYAVIFVVV GYLYPLLAGT GAVPLDRGQW TDGYFADIAK LLGGAWLMWW MQAAAAMSNM
401: GMFVAEMSSD SYQLLGMAER GMLPAFFATR SRYGTPLVGI LFSASGVLLL STMSFQEIVA AENFLYCFGM LLEFLSFVLL RVRRPDAPRP YRVPLGTAGC
501: VVMLVPATAL IVAVLALSTL KVALVSLGAL AIGLVLQPLL KFVEKKQWLR FSVNSDLPGI DVNHQPAAPD DPLLV
Best Arabidopsis Sequence Match ( AT1G31820.1 )
(BLAST)
001: MGDYNMNEFA YGNLYDDDDG DVGGSSKEGN NSIQKVSMLP LVFLIFYEVS GGPFGAEGSV NAAGPLLALL GFVIFPFIWC IPEALITAEM STMFPINGGF
101: VVWVSSALGT FWGFQVGWMK WLCGVIDNAL YPVLFLDYLK SAVPALATGL PRVASILILT LLLTYLNYRG LTIVGWTAVF MGVFSMLPFA VMSLVSIPQL
201: EPSRWLVMDL GNVNWNLYLN TLLWNLNYWD SVSTLAGEVA NPKKTLPKAL CYGVIFVALS NFLPLLSGTG AIPLDRELWT DGYLAEVAKA IGGGWLQLWV
301: QAAAATSNMG MFLAEMSSDS FQLLGMAELG ILPEIFAQRS RYGTPLLGIL FSASGVLLLS GLSFQEIIAA ENLLYCGGMI LEFIAFVRLR KKHPAASRPY
401: KIPVGTVGSI LICVPPIVLI CLVIVLSTIK VALVSFVMVV IGFLMKPCLN HMDGKKWVKF SVCSDLAEFQ KENLDCEESL LR
Arabidopsis Description
Probable polyamine transporter At1g31820 [Source:UniProtKB/Swiss-Prot;Acc:Q9C6S4]
SUBAcon: [plasma membrane]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.