Factsheet for Solyc08g078100.1.1

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

nucleus 1
plasma membrane 5
extracellular 1
endoplasmic reticulum 1
vacuole 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	nucleus, secretory
BaCelLo:	nucleus
MultiLoc:	plasma membrane
Plant-mPloc:	plasma membrane
PProwler:	secretory
WoLF PSORT:	plasma membrane
YLoc:	plasma membrane

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400067464	Potato	plasma membrane	97.22	97.22
KRH07711	Soybean	plasma membrane	78.63	77.8
VIT_02s0033g01310.t01	Wine grape	plasma membrane	79.7	77.55
KRH76400	Soybean	plasma membrane	80.13	77.16
Solyc08g075710.2.1	Tomato	plastid	85.9	75.28
GSMUA_Achr4P11590_001	Banana	plasma membrane	49.57	74.12
VIT_02s0033g01320.t01	Wine grape	plasma membrane	74.79	74.0
Solyc08g005540.1.1	Tomato	cytosol, peroxisome, plasma membrane	83.76	73.96
GSMUA_Achr9P23200_001	Banana	plasma membrane	48.5	72.99
KRH39685	Soybean	cytosol, peroxisome, plasma membrane, plastid	79.49	72.09
CDY12285	Canola	golgi, peroxisome, plasma membrane, plastid	76.07	71.49
Bra023210.1-P	Field mustard	golgi, peroxisome, plasma membrane, plastid	75.85	71.29
AT1G31830.1	Thale cress	golgi, mitochondrion, plasma membrane	75.21	71.11
CDY63076	Canola	endoplasmic reticulum, plasma membrane, vacuole	56.84	70.93
GSMUA_Achr1P27820_001	Banana	plasma membrane	64.74	70.14
AT5G05630.1	Thale cress	plasma membrane	71.79	68.57
Zm00001d024516_P001	Maize	plasma membrane	71.79	68.15
Solyc01g111800.2.1	Tomato	plasma membrane	66.67	67.68
Bra023209.1-P	Field mustard	plasma membrane	65.17	67.48
TraesCS5D01G028100.1	Wheat	plasma membrane	70.94	67.07
TraesCS5A01G022700.1	Wheat	mitochondrion, plasma membrane	70.94	67.07
TraesCS5B01G019600.1	Wheat	mitochondrion, plasma membrane	70.51	66.67
AT1G31820.1	Thale cress	plasma membrane	68.59	66.6
EES13409	Sorghum	plasma membrane	70.09	66.53
TraesCS6D01G245700.1	Wheat	plasma membrane	70.73	66.47
CDX70141	Canola	plasma membrane, plastid	69.02	66.32
CDX98852	Canola	plasma membrane, plastid	68.8	65.85
HORVU5Hr1G006170.3	Barley	golgi, plasma membrane	70.51	65.48
CDY12286	Canola	plasma membrane	54.7	65.47
Solyc09g092420.1.1	Tomato	plasma membrane	39.74	65.26
Bra009122.1-P	Field mustard	plasma membrane	68.38	65.17
Zm00001d017728_P001	Maize	plasma membrane	72.22	64.38
Os02t0700500-01	Rice	cytosol, peroxisome, plasma membrane	71.58	63.09
TraesCS6A01G269200.2	Wheat	plasma membrane	70.73	62.69
OQU85562	Sorghum	peroxisome, plasma membrane, vacuole	72.01	62.64
TraesCS6B01G296500.2	Wheat	plasma membrane	69.66	61.39
Os03t0576900-01	Rice	plastid	70.73	60.18
HORVU6Hr1G068230.1	Barley	plastid	70.09	57.04
Solyc10g049640.1.1	Tomato	plasma membrane	52.35	50.0
Solyc01g034080.1.1	Tomato	plasma membrane	43.8	43.62
Solyc01g005920.2.1	Tomato	plasma membrane	43.38	42.74

Protein Annotations

Gene3D:1.20.1740.10	MapMan:24.2.3.5.1	InterPro:AA/rel_permease1	GO:GO:0003333	GO:GO:0003674	GO:GO:0005215
GO:GO:0005575	GO:GO:0005623	GO:GO:0005886	GO:GO:0005887	GO:GO:0006810	GO:GO:0008150
GO:GO:0015171	GO:GO:0015179	GO:GO:0015297	GO:GO:0016020	GO:GO:0016021	GO:GO:0022857
GO:GO:0055085	GO:GO:1902475	UniProt:K4CNG9	PFAM:PF13520	PIRSF:PIRSF006060	PANTHER:PTHR11785
PANTHER:PTHR11785:SF338	EnsemblPlantsGene:Solyc08g078100.1	EnsemblPlants:Solyc08g078100.1.1	TMHMM:TMhelix	UniParc:UPI000276C8B6	SEG:seg

Description

No Description!

Coordinates

chr8:+:61950808..61952214

Molecular Weight (calculated)

51713.2 Da

IEP (calculated)

6.047

GRAVY (calculated)

0.684

Length

468 amino acids

Sequence
(BLAST)

001: MGEFDDGEYA GINEVTSPRE NNARKVSVLP LLFLIFYEVS GGPFGVEDTV RAAGPLLALL GFLVFPFIWS VPEALITAEM GTMFPENGGY VVWVSSALGP
101: YWGFQLGWMK WLSGVIDNAL YPVLFLDYLK SAIPALGGGL PRVLAVLVLT VVLTYMNYRG LTIVGWVAVS LGILSILPFV VMGLISIPKL RPSRWLVVDV
201: QSVDWNLYLN TLFWNLNYWD SISTLAGEVH NPKKTLPKAL FYAVILVVLS YFFPLLIGTG AIPLEHDLWT DGYFSDIAKI LGGVWLRVWI QGAAAASNMG
301: MFVAEMSSDS FQLLGMAERG LLPEFFSKRS RYGTPLFGIL FSASGVILLS WLSFQEIVAA ENFLYCFGMI LEFIAFVLLR MKYPHAPRPF KIHGGTVGAI
401: LLCIPPTILI CVVLALSSFK VMVVSLAAVA IGLVMQPCLK LIENKRWLKF SISSDLPDDI TTHEPLLR

Best Arabidopsis Sequence Match ( AT1G31830.1 )
(BLAST)

001: MQKRRIITVN PSASIEMSQY ENNEVPYSSV GADEVPSSPP KATDKIRKVS MLPLVFLIFY EVSGGPFGVE DSVNAAGPLL ALLGFVIFPF IWSIPEALIT
101: AEMGTMYPEN GGYVVWVSSA LGPFWGFQQG WMKWLSGVID NALYPVLFLD YLKSGVPALG SGLPRVASIL VLTILLTYLN YRGLTIVGWV AVLMGVFSIL
201: PFAVMGLISI PQLEPSRWLV MDLGNVNWNL YLNTLFWNLN YWDSISTLAG EVENPNHTLP KALFYGVILV ACSYIFPLLA GIGAIPLERE KWTDGYFSDV
301: AKALGGAWLR WWVQAAAATS NMGMFIAEMS SDSFQLLGMA ERGMLPEFFA KRSRYGTPLL GILFSASGVV LLSWLSFQEI VAAENLLYCV GMILEFIAFV
401: RMRMKHPAAS RPYKIPIGTT GSILMCIPPT ILICAVVALS SLKVAAVSIV MMIIGFLIHP LLNHMDRKRW VKFSISSDLP DLQQQTREYE ETLIR

Arabidopsis Description

Probable polyamine transporter At1g31830 [Source:UniProtKB/Swiss-Prot;Acc:Q9C6S5]
SUBAcon: [mitochondrion,plasma membrane,golgi]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.