Factsheet for Zm00001d024516_P001

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

mitochondrion 3
golgi 1
plasma membrane 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	golgi, mitochondrion, plasma membrane
iPSORT:	mitochondrion
MultiLoc:	golgi
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	plasma membrane
YLoc:	plasma membrane

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES13409	Sorghum	plasma membrane	94.93	94.93
TraesCS5A01G022700.1	Wheat	mitochondrion, plasma membrane	87.42	87.07
TraesCS5D01G028100.1	Wheat	plasma membrane	86.21	85.86
TraesCS5B01G019600.1	Wheat	mitochondrion, plasma membrane	85.8	85.45
HORVU5Hr1G006170.3	Barley	golgi, plasma membrane	86.61	84.72
Os03t0576900-01	Rice	plastid	89.86	80.55
GSMUA_Achr4P11590_001	Banana	plasma membrane	47.87	75.4
GSMUA_Achr9P23200_001	Banana	plasma membrane	46.86	74.28
VIT_03s0038g02860.t01	Wine grape	plasma membrane	70.59	71.9
Solyc08g078100.1.1	Tomato	plasma membrane	68.15	71.79
PGSC0003DMT400067464	Potato	plasma membrane	67.95	71.58
VIT_02s0033g01310.t01	Wine grape	plasma membrane	69.37	71.1
KRH76400	Soybean	plasma membrane	69.57	70.58
PGSC0003DMT400047497	Potato	plasma membrane	66.73	70.15
KRG90652	Soybean	plasma membrane	65.72	69.53
KRH07711	Soybean	plasma membrane	66.53	69.34
CDY12285	Canola	golgi, peroxisome, plasma membrane, plastid	68.36	67.67
AT1G31830.1	Thale cress	golgi, mitochondrion, plasma membrane	67.75	67.47
Bra023210.1-P	Field mustard	golgi, peroxisome, plasma membrane, plastid	68.15	67.47
VIT_02s0033g01320.t01	Wine grape	plasma membrane	63.69	66.38
KRH39685	Soybean	cytosol, peroxisome, plasma membrane, plastid	69.37	66.28
PGSC0003DMT400008784	Potato	plasma membrane	62.07	65.81
Solyc01g111800.2.1	Tomato	plasma membrane	61.46	65.73
CDY63076	Canola	endoplasmic reticulum, plasma membrane, vacuole	49.29	64.8
Solyc09g092420.1.1	Tomato	plasma membrane	37.12	64.21
Solyc08g075710.2.1	Tomato	plastid	69.17	63.86
AT1G31820.1	Thale cress	plasma membrane	61.46	62.86
AT5G05630.1	Thale cress	plasma membrane	62.27	62.65
Solyc08g005540.1.1	Tomato	cytosol, peroxisome, plasma membrane	67.14	62.45
Zm00001d017728_P001	Maize	plasma membrane	65.92	61.9
CDX98852	Canola	plasma membrane, plastid	61.05	61.55
Bra023209.1-P	Field mustard	plasma membrane	56.39	61.5
CDX70141	Canola	plasma membrane, plastid	60.65	61.4
KRH36101	Soybean	plasma membrane	33.27	60.97
Bra009122.1-P	Field mustard	plasma membrane	60.04	60.29
CDY12286	Canola	plasma membrane	46.65	58.82
Zm00001d030832_P001	Maize	plasma membrane	48.88	48.49
Zm00001d029320_P001	Maize	plasma membrane	26.57	42.12
Zm00001d029321_P001	Maize	plasma membrane	40.57	41.15
Zm00001d029318_P001	Maize	plasma membrane	24.95	40.73
Zm00001d029314_P001	Maize	plasma membrane	38.95	40.0
KRH57856	Soybean	cytosol	18.26	37.34
Zm00001d029319_P001	Maize	endoplasmic reticulum, plasma membrane, plastid, vacuole	10.55	35.37

Protein Annotations

Gene3D:1.20.1740.10	EntrezGene:100193038	MapMan:24.2.3.5.1	InterPro:AA/rel_permease1	ProteinID:AQK41344.1	EMBL:BT062974
UniProt:C0P3V5	GO:GO:0003333	GO:GO:0003674	GO:GO:0005215	GO:GO:0005575	GO:GO:0006810
GO:GO:0008150	GO:GO:0015171	GO:GO:0016020	GO:GO:0016021	GO:GO:0022857	GO:GO:0055085
PFAM:PF13520	PIRSF:PIRSF006060	PANTHER:PTHR11785	PANTHER:PTHR11785:SF338	TMHMM:TMhelix	UniParc:UPI0001948F84
EnsemblPlantsGene:Zm00001d024516	EnsemblPlants:Zm00001d024516_P001	EnsemblPlants:Zm00001d024516_T001	SEG:seg	:	:

Description

Polyamine transporter RMV1

Coordinates

chr10:-:75580964..75584778

Molecular Weight (calculated)

54412.4 Da

IEP (calculated)

5.415

GRAVY (calculated)

0.627

Length

493 amino acids

Sequence
(BLAST)

001: MKLRNTAITR ANSACLPMGD RVGVKYNSIN EAEEHKGGHG IPKVSMIPLI FLIFYEVSGG PFGIEDSVKA AGPLLAILGF LLFALIWSVP EALITAEMGT
101: MFPENGGYVV WVSSALGPFW GFQQGWAKWL SGVIDNALYP VLFLDYVKSS VPALGGGLPR TLAVLILTVA LTYMNYRGLT IVGWVAVFLG VFSLLPFFVM
201: GLIAIPQIEP SRWLEMDLGS VDWGLYLNTL FWNLNYWDSI STLAGEVENP KRTLPRALSY ALVLVVGGYL YPLITCTAAV PIVREHWSDG YFSDIARILG
301: GIWLHSWIQA AAALSNMGNF LTEMSSDSYQ LLGMAERGML PDFFAKRSHY GTPLIGILFS AFGVILLSWM SFQEIIAAEN YLYCFGMILE FIAFIKLRVY
401: HPNASRPYKI PLGTIGAILM IIPPGLLIIV VMALASYKVM VVSILAMVFG FVLQPCLVYV EKKRWLRFSI SADLPDLPDV QEIAEDDAVP LVV

Best Arabidopsis Sequence Match ( AT1G31830.1 )
(BLAST)

001: MQKRRIITVN PSASIEMSQY ENNEVPYSSV GADEVPSSPP KATDKIRKVS MLPLVFLIFY EVSGGPFGVE DSVNAAGPLL ALLGFVIFPF IWSIPEALIT
101: AEMGTMYPEN GGYVVWVSSA LGPFWGFQQG WMKWLSGVID NALYPVLFLD YLKSGVPALG SGLPRVASIL VLTILLTYLN YRGLTIVGWV AVLMGVFSIL
201: PFAVMGLISI PQLEPSRWLV MDLGNVNWNL YLNTLFWNLN YWDSISTLAG EVENPNHTLP KALFYGVILV ACSYIFPLLA GIGAIPLERE KWTDGYFSDV
301: AKALGGAWLR WWVQAAAATS NMGMFIAEMS SDSFQLLGMA ERGMLPEFFA KRSRYGTPLL GILFSASGVV LLSWLSFQEI VAAENLLYCV GMILEFIAFV
401: RMRMKHPAAS RPYKIPIGTT GSILMCIPPT ILICAVVALS SLKVAAVSIV MMIIGFLIHP LLNHMDRKRW VKFSISSDLP DLQQQTREYE ETLIR

Arabidopsis Description

Probable polyamine transporter At1g31830 [Source:UniProtKB/Swiss-Prot;Acc:Q9C6S5]
SUBAcon: [golgi,plasma membrane,mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.