Factsheet for Zm00001d029320_P001

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

golgi 1
mitochondrion 1
plasma membrane 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	golgi, mitochondrion, plasma membrane
MultiLoc:	golgi
PProwler:	mitochondrion
WoLF PSORT:	plasma membrane
YLoc:	plasma membrane

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EER92207	Sorghum	endoplasmic reticulum, plasma membrane, vacuole	71.38	88.1
CDX75722	Canola	plasma membrane	42.77	49.26
Zm00001d029321_P001	Maize	plasma membrane	66.56	42.59
Zm00001d029314_P001	Maize	plasma membrane	55.31	35.83
Solyc01g005920.2.1	Tomato	plasma membrane	49.2	32.21
PGSC0003DMT400082048	Potato	plasma membrane	48.87	32.14
VIT_06s0004g00790.t01	Wine grape	plasma membrane	48.23	31.58
KRH72395	Soybean	plasma membrane	47.59	31.49
Bra001514.1-P	Field mustard	plasma membrane	47.59	31.03
CDX75721	Canola	plasma membrane	47.59	31.03
CDX82530	Canola	plasma membrane	47.59	31.03
KRH16786	Soybean	plasma membrane	47.91	30.98
CDY23626	Canola	plasma membrane	46.95	30.74
Bra027411.1-P	Field mustard	plasma membrane	46.95	30.61
CDX97502	Canola	plasma membrane	46.95	30.61
VIT_06s0004g00800.t01	Wine grape	plasma membrane	46.95	30.23
KRH58913	Soybean	plasma membrane	46.62	30.08
Solyc01g034080.1.1	Tomato	plasma membrane	45.34	30.0
PGSC0003DMT400028298	Potato	mitochondrion, plasma membrane	45.34	30.0
AT3G13620.1	Thale cress	plasma membrane	45.98	29.92
KRH42817	Soybean	plasma membrane	46.3	29.81
PGSC0003DMT400082047	Potato	plasma membrane	45.34	29.5
GSMUA_AchrUn_...	Banana	cytosol, peroxisome, plasma membrane	40.84	27.37
Zm00001d024516_P001	Maize	plasma membrane	42.12	26.57
Zm00001d017728_P001	Maize	plasma membrane	42.77	25.33
Zm00001d029318_P001	Maize	plasma membrane	23.47	24.17
Zm00001d030832_P001	Maize	plasma membrane	38.59	24.14
KRH45451	Soybean	plasma membrane	2.57	3.69
Zm00001d029319_P001	Maize	endoplasmic reticulum, plasma membrane, plastid, vacuole	0.64	1.36

Protein Annotations

Gene3D:1.20.1740.10	MapMan:24.2.3.5.1	UniProt:A0A1D6K481	InterPro:AA/rel_permease1	GO:GO:0003333	GO:GO:0003674
GO:GO:0005215	GO:GO:0005575	GO:GO:0006810	GO:GO:0008150	GO:GO:0015171	GO:GO:0016020
GO:GO:0016021	GO:GO:0022857	GO:GO:0055085	ProteinID:ONL98432.1	PFAM:PF13520	PANTHER:PTHR11785
PANTHER:PTHR11785:SF378	TMHMM:TMhelix	UniParc:UPI000842F0EA	EnsemblPlantsGene:Zm00001d029320	EnsemblPlants:Zm00001d029320_P001	EnsemblPlants:Zm00001d029320_T001
SEG:seg	:	:	:	:	:

Description

Probable polyamine transporter

Coordinates

chr1:-:65851496..65852431

Molecular Weight (calculated)

31875.6 Da

IEP (calculated)

7.960

GRAVY (calculated)

0.502

Length

311 amino acids

Sequence
(BLAST)

001: MKQGIHGSDN ISPLHSKASP EALPGGDATQ FPITGVAGTG SGTGHARGRN KLTLFPLIFL IFFEVAGGPY GAEPAVQAGG PLLALIGFTV FPFVWAVPES
101: LVTAELSTAM PGNGGYVVWV DRAFGPFAGS LMGTWKYVCS AIGAAAFPAL CSDYLTRVAP AVSRGGARVA TVVTFNVALT LLNCTGLSVV GWTAVALGLA
201: ALSPFVLMVG AALPKVRPRR WGATTAAGGK DWKLLLNTLF WNLNGWDSVS TMAGEVERPG RTFPAALVSA VCIGSLGYVL PLLAATGAVD APPEAWGDGY
301: FADAAGAHVT L

Best Arabidopsis Sequence Match ( AT1G31820.1 )
(BLAST)

001: MGDYNMNEFA YGNLYDDDDG DVGGSSKEGN NSIQKVSMLP LVFLIFYEVS GGPFGAEGSV NAAGPLLALL GFVIFPFIWC IPEALITAEM STMFPINGGF
101: VVWVSSALGT FWGFQVGWMK WLCGVIDNAL YPVLFLDYLK SAVPALATGL PRVASILILT LLLTYLNYRG LTIVGWTAVF MGVFSMLPFA VMSLVSIPQL
201: EPSRWLVMDL GNVNWNLYLN TLLWNLNYWD SVSTLAGEVA NPKKTLPKAL CYGVIFVALS NFLPLLSGTG AIPLDRELWT DGYLAEVAKA IGGGWLQLWV
301: QAAAATSNMG MFLAEMSSDS FQLLGMAELG ILPEIFAQRS RYGTPLLGIL FSASGVLLLS GLSFQEIIAA ENLLYCGGMI LEFIAFVRLR KKHPAASRPY
401: KIPVGTVGSI LICVPPIVLI CLVIVLSTIK VALVSFVMVV IGFLMKPCLN HMDGKKWVKF SVCSDLAEFQ KENLDCEESL LR

Arabidopsis Description

Probable polyamine transporter At1g31820 [Source:UniProtKB/Swiss-Prot;Acc:Q9C6S4]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.