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Canola
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Canola
Subcellular Localization
min:
: max

 
Winner_takes_all: plasma membrane

Predictor Summary:
  • nucleus 1
  • plasma membrane 4
  • extracellular 1
  • endoplasmic reticulum 1
  • vacuole 1
  • golgi 1
Predictors GFP MS/MS Papers
Winner Takes All:plasma membrane
Any Predictor:nucleus, plasma membrane
BaCelLo:nucleus
MultiLoc:plasma membrane
PProwler:secretory
WoLF PSORT:plasma membrane
YLoc:plasma membrane
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDX75721 Canola plasma membrane 94.81 53.67
CDX82530 Canola plasma membrane 93.33 52.83
Bra001514.1-P Field mustard plasma membrane 92.59 52.41
CDY23626 Canola plasma membrane 89.26 50.74
CDX97502 Canola plasma membrane 89.63 50.73
AT3G13620.1 Thale cress plasma membrane 86.3 48.74
EER92207 Sorghum endoplasmic reticulum, plasma membrane, vacuole 44.07 47.22
Os03t0375966-00 Rice cytosol, golgi, peroxisome 52.22 45.19
TraesCSU01G202300.1 Wheat plasma membrane 49.63 44.22
TraesCSU01G047000.1 Wheat plasma membrane 49.63 44.22
Zm00001d029320_P001 Maize plasma membrane 49.26 42.77
Os03t0374900-00 Rice peroxisome, plasma membrane, vacuole 50.74 41.52
KRH72395 Soybean plasma membrane 68.89 39.57
PGSC0003DMT400028298 Potato mitochondrion, plasma membrane 67.41 38.72
KRH16786 Soybean plasma membrane 68.52 38.46
Solyc01g034080.1.1 Tomato plasma membrane 66.67 38.3
PGSC0003DMT400082048 Potato plasma membrane 67.04 38.27
Solyc01g005920.2.1 Tomato plasma membrane 67.04 38.11
VIT_06s0004g00800.t01 Wine grape plasma membrane 67.78 37.89
HORVU3Hr1G005120.1 Barley cytosol 28.52 37.2
Zm00001d029321_P001 Maize plasma membrane 54.44 30.25
TraesCS7A01G464900.1 Wheat golgi, plasma membrane, vacuole 53.33 29.94
TraesCS5B01G533500.1 Wheat plasma membrane 54.07 29.74
CDY63076 Canola endoplasmic reticulum, plasma membrane, vacuole 41.11 29.6
TraesCS7B01G365600.1 Wheat golgi, plasma membrane, vacuole 52.96 29.55
TraesCS7D01G452600.1 Wheat golgi, plasma membrane, vacuole 53.33 29.33
EER92206 Sorghum plasma membrane 53.33 29.03
CDY12286 Canola plasma membrane 41.11 28.39
HORVU7Hr1G106710.2 Barley cytosol, plasma membrane 53.7 28.21
TraesCS4B01G350000.1 Wheat golgi, peroxisome, plasma membrane 51.85 28.0
TraesCS5D01G531700.1 Wheat mitochondrion, plasma membrane 54.07 27.97
TraesCS5D01G321300.1 Wheat golgi, peroxisome, plasma membrane 50.74 27.51
TraesCS5B01G316000.1 Wheat golgi, peroxisome, plasma membrane 50.74 27.51
HORVU4Hr1G085290.4 Barley golgi, peroxisome, plasma membrane 51.48 27.42
TraesCS5A01G315000.1 Wheat golgi, peroxisome, plasma membrane 50.37 27.31
OQU92528 Sorghum plasma membrane 49.63 27.13
Zm00001d029314_P001 Maize plasma membrane 48.15 27.08
TraesCS4D01G344800.1 Wheat plasma membrane 50.37 26.82
CDX99215 Canola plasma membrane 47.78 26.76
CDY42190 Canola golgi, plasma membrane, vacuole 47.04 26.57
CDY46166 Canola plasma membrane 47.04 26.51
CDY12285 Canola golgi, peroxisome, plasma membrane, plastid 48.89 26.51
TraesCS3A01G030900.1 Wheat peroxisome, plasma membrane, vacuole 47.04 26.4
CDY69762 Canola golgi, plasma membrane, vacuole 46.67 26.36
KXG39283 Sorghum plasma membrane 50.74 26.3
CDX98852 Canola plasma membrane, plastid 47.41 26.18
HORVU3Hr1G005010.3 Barley vacuole 22.59 25.31
TraesCS3B01G031700.1 Wheat plasma membrane 47.41 25.3
CDX70141 Canola plasma membrane, plastid 45.56 25.26
Os03t0375300-02 Rice nucleus 50.74 25.05
GSMUA_AchrUn_... Banana cytosol, peroxisome, plasma membrane 37.04 21.55
Zm00001d029318_P001 Maize plasma membrane 21.11 18.87
KRH45451 Soybean plasma membrane 2.22 2.76
TraesCS5D01G321700.1 Wheat plasma membrane 1.11 1.56
TraesCS5D01G321500.1 Wheat golgi, mitochondrion, plasma membrane, plastid, vacuole 1.11 1.56
Os03t0375900-01 Rice plasma membrane 1.11 1.45
Zm00001d029319_P001 Maize endoplasmic reticulum, plasma membrane, plastid, vacuole 0.74 1.36
TraesCSU01G046900.1 Wheat plasma membrane 0.74 1.34
TraesCS5A01G315600.1 Wheat extracellular, plasma membrane, vacuole 0.74 1.32
Protein Annotations
EnsemblPlants:CDX75722EnsemblPlantsGene:GSBRNA2T00123639001Gene3D:1.20.1740.10GO:A0A078CG05GO:GO:0003674GO:GO:0005215
GO:GO:0005575GO:GO:0006810GO:GO:0008150GO:GO:0016020GO:GO:0022857GO:GO:0055085
InterPro:AA/rel_permease1PANTHER:PTHR11785PANTHER:PTHR11785:SF378PFAM:PF13520ProteinID:CDX75722ProteinID:CDX75722.1
TMHMM:TMhelixUniParc:UPI0004EDEAE5MapMan:24.2.3.5.1:::
Description
BnaC03g38050D
Coordinates
chrLK031805:-:186098..187444
Molecular Weight (calculated)
29596.4 Da
IEP (calculated)
6.095
GRAVY (calculated)
0.694
Length
270 amino acids
Sequence
(BLAST)
001: METTETSRVS HELPVTTTDS SGSTAKKLTL VPLIFLIYFE VAGGPFGEEP AVQAAGPLLA ILGFLIFPFI WSVPEALITA ELSTAFPGNG GFVIWAHRAF
101: GAFVGSMMGS LKYLSGVINV ASFPVLCVTY LEKLFPVLES GWPRNVCIFA STVVLSFLNY TGLAIVGYAA VVLGLVSLSP FLVMSAMAIP KIQPHRWGSL
201: GDKQKDWNLY FNTLFWNLNF WDNVSTLAGE VDNPQKTFPL ALLVAVIFQC WFPVSMKFVV FHSMTFILFV
Best Arabidopsis Sequence Match ( AT3G13620.1 )
(BLAST)
001: MAISEASKSS HELPVTTAES SGKKATAKKL TLIPLVFLIY FEVAGGPFGE EPAVQAAGPL LAILGFLIFP FIWSIPEALI TAELSTAFPG NGGFVIWAHR
101: AFGSFVGSMM GSLKFLSGVI NVASFPVLCV TYLDKLFPVL ESGWPRNVCI FASTVVLSFL NYTGLAIVGY AAVVLGLVSL SPFLVMSAMA IPKIKPHRWG
201: SLGTKKKDWN LYFNTLFWNL NFWDNVSTLA GEVDEPQKTF PLALLIAVIF TCVAYLIPLF AVTGAVSVDQ SRWENGFHAE AAEMIAGKWL KIWIEIGAVL
301: SSIGLFEAQL SSSAYQLEGM AELGFLPKFF GVRSKWFNTP WVGILISALM SLGLSYMNFT DIISSANFLY TLGMFLEFAS FIWLRRKLPQ LKRPYRVPLK
401: IPGLVVMCLI PSAFLVLILV FATKIVYLIC GVMTIGAIGW YFLINYFRKT KIFEFNEVID DLDNNVNGEH PKVDDHNS
Arabidopsis Description
PUT4 [Source:UniProtKB/TrEMBL;Acc:A0A178VLM5]
SUBAcon: [plasma membrane]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.