CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane, plastid

Predictor Summary:

plastid 4
mitochondrion 1
plasma membrane 2
peroxisome 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra009122.1-P	Field mustard	plasma membrane	97.54	96.74
CDX98852	Canola	plasma membrane, plastid	93.63	93.25
AT5G05630.1	Thale cress	plasma membrane	79.47	78.98
VIT_02s0033g01310.t01	Wine grape	plasma membrane	68.79	69.65
Solyc08g078100.1.1	Tomato	plasma membrane	66.32	69.02
PGSC0003DMT400067464	Potato	plasma membrane	65.71	68.38
CDY63076	Canola	endoplasmic reticulum, plasma membrane, vacuole	52.16	67.73
PGSC0003DMT400047497	Potato	plasma membrane	65.09	67.59
VIT_02s0033g01320.t01	Wine grape	plasma membrane	65.09	67.02
KRH07711	Soybean	plasma membrane	64.27	66.17
CDY12285	Canola	golgi, peroxisome, plasma membrane, plastid	67.15	65.66
KRH76400	Soybean	plasma membrane	64.89	65.02
GSMUA_Achr1P27820_001	Banana	plasma membrane	57.29	64.58
GSMUA_Achr4P11590_001	Banana	plasma membrane	41.27	64.22
CDY12286	Canola	plasma membrane	50.1	62.4
GSMUA_Achr9P23200_001	Banana	plasma membrane	39.84	62.38
TraesCS6D01G245700.1	Wheat	plasma membrane	62.63	61.24
KRH39685	Soybean	cytosol, peroxisome, plasma membrane, plastid	64.68	61.05
EES13409	Sorghum	plasma membrane	61.6	60.85
Zm00001d024516_P001	Maize	plasma membrane	61.4	60.65
Solyc08g005540.1.1	Tomato	cytosol, peroxisome, plasma membrane	65.71	60.38
TraesCS5B01G019600.1	Wheat	mitochondrion, plasma membrane	60.57	59.6
TraesCS5A01G022700.1	Wheat	mitochondrion, plasma membrane	60.57	59.6
Solyc08g075710.2.1	Tomato	plastid	65.3	59.55
TraesCS5D01G028100.1	Wheat	plasma membrane	60.37	59.39
Zm00001d017728_P001	Maize	plasma membrane	63.45	58.86
HORVU5Hr1G006170.3	Barley	golgi, plasma membrane	60.78	58.73
TraesCS6A01G269200.2	Wheat	plasma membrane	63.04	58.14
OQU85562	Sorghum	peroxisome, plasma membrane, vacuole	64.07	57.99
Os02t0700500-01	Rice	cytosol, peroxisome, plasma membrane	62.22	57.06
TraesCS6B01G296500.2	Wheat	plasma membrane	62.01	56.87
Os03t0576900-01	Rice	plastid	60.57	53.64
CDY42190	Canola	golgi, plasma membrane, vacuole	52.36	53.35
HORVU6Hr1G068230.1	Barley	plastid	62.42	52.87
CDY46166	Canola	plasma membrane	51.95	52.82
CDY69762	Canola	golgi, plasma membrane, vacuole	51.75	52.72
CDX99215	Canola	plasma membrane	51.75	52.28
CDX75722	Canola	plasma membrane	25.26	45.56
CDY23626	Canola	plasma membrane	41.48	42.53
CDX97502	Canola	plasma membrane	41.27	42.14
CDX82530	Canola	plasma membrane	40.86	41.72
CDX75721	Canola	plasma membrane	40.86	41.72

Protein Annotations

EnsemblPlants:CDX70141	EnsemblPlantsGene:GSBRNA2T00136252001	Gene3D:1.20.1740.10	GO:A0A078BZL9	GO:GO:0003674	GO:GO:0005215
GO:GO:0005575	GO:GO:0006810	GO:GO:0008150	GO:GO:0016020	GO:GO:0022857	GO:GO:0055085
InterPro:AA/rel_permease1	PANTHER:PTHR11785	PANTHER:PTHR11785:SF338	PFAM:PF13520	PIRSF:PIRSF006060	ProteinID:CDX70141
ProteinID:CDX70141.1	SEG:seg	TMHMM:TMhelix	UniParc:UPI0004EF1E2A	MapMan:24.2.3.5.1	:

Description

BnaA10g24900D

Coordinates

chrLK031790:-:3300397..3301860

Molecular Weight (calculated)

52782.3 Da

IEP (calculated)

8.275

GRAVY (calculated)

0.627

Length

487 amino acids

Sequence
(BLAST)

001: MTDLSSSSLR SEAHKPTGNS PPPPPPGHVS ISLTPPSPTP PSATTNLRKI SLLPLIFLIF HEVSGGPFGI EDTVKAAGPL LSILGLILFP FVWSIPEALI
101: TAEMGTMFPE NGGYVVWVSS ALGPYWGFQQ GWVKWLSGVI DNALYPILFL DYLQSGLPVI SSGLPRVASV ITLTFALTYL NYRGLSVVGV AAVMIGVFSI
201: LPFVVMCLVS IPKVEPLRWL VVSEKMKGVD FGLYLNTLFW NLNYWDSIST LSGEVVSPSE TLPKALFYAF LLVVLSYIFP VLSGTGALPL DQRRWTDGYF
301: ADVGKVIGGG WLGWWIRAAA AASNMGMFLA EMSSDSFQLL GMAERGMLPE VFARRSRYGT PWVGILFSAS GVIVLSWLSF QEIVAAENLL YCFGMVLEFV
401: AFVRLRVKYP AASRPFKIPV GVLGSVIMCV PPTVLIGFIA AFSDLKVAGV SLAAVVIGLV LQPCLKQVEK KGWLKFSVSS HLPDLMA

Best Arabidopsis Sequence Match ( AT5G05630.1 )
(BLAST)

001: MTELSSPNLD SASQKPRIST ENPPPPPPHI SIGVTTGDPA TSPARTVNQI KKITVLPLVF LIFYEVSGGP FGIEDSVKAA GPLLAIVGFI VFPFIWSIPE
101: ALITAEMGTM FPENGGYVVW VTLAMGPYWG FQQGWVKWLS GVIDNALYPI LFLDYLKSGI PILGSGIPRV AAILVLTVAL TYLNYRGLSI VGVAAVLLGV
201: FSILPFVVMS FMSIPKLKPS RWLVVSKKMK GVNWSLYLNT LFWNLNYWDS VSTLTGEVEN PSKTLPRALF YALLLVVFSY IFPVLTGTGA IALDQKLWTD
301: GYFADIGKVI GGVWLGWWIQ AAAATSNMGM FLAEMSSDSF QLLGMAERGM LPEVFAKRSR YRTPWVGILF SASGVIILSW LSFQEIVAAE NLLYCFGMVL
401: EFITFVRLRM KYPAASRPFK IPVGVLGSVL MCIPPTVLIG VIMAFTNLKV ALVSLAAIVI GLVLQPCLKQ VEKKGWLKFS TSSHLPNLME

Arabidopsis Description

RMV1Polyamine transporter RMV1 [Source:UniProtKB/Swiss-Prot;Acc:Q9FFL1]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.