Factsheet for VIT_02s0033g01310.t01

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

nucleus 1
plasma membrane 4
extracellular 1
endoplasmic reticulum 1
vacuole 2
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	nucleus, secretory
BaCelLo:	nucleus
MultiLoc:	plasma membrane
Plant-mPloc:	plasma membrane
PProwler:	secretory
WoLF PSORT:	vacuole
YLoc:	plasma membrane

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_02s0033g01320.t01	Wine grape	plasma membrane	84.41	85.84
Solyc08g078100.1.1	Tomato	plasma membrane	77.55	79.7
PGSC0003DMT400067464	Potato	plasma membrane	77.55	79.7
PGSC0003DMT400047497	Potato	plasma membrane	75.47	77.4
GSMUA_Achr4P11590_001	Banana	plasma membrane	50.31	77.32
VIT_03s0038g02860.t01	Wine grape	plasma membrane	76.92	76.45
GSMUA_Achr9P23200_001	Banana	plasma membrane	48.44	74.92
KRH07711	Soybean	plasma membrane	73.6	74.84
KRH76400	Soybean	plasma membrane	75.26	74.49
CDY63076	Canola	endoplasmic reticulum, plasma membrane, vacuole	57.59	73.87
CDY12285	Canola	golgi, peroxisome, plasma membrane, plastid	75.47	72.89
Bra023210.1-P	Field mustard	golgi, peroxisome, plasma membrane, plastid	75.26	72.69
GSMUA_Achr1P27820_001	Banana	plasma membrane	65.07	72.45
AT1G31830.1	Thale cress	golgi, mitochondrion, plasma membrane	74.22	72.12
AT1G31820.1	Thale cress	plasma membrane	69.85	69.71
KRH39685	Soybean	cytosol, peroxisome, plasma membrane, plastid	74.64	69.57
Zm00001d024516_P001	Maize	plasma membrane	71.1	69.37
Bra023209.1-P	Field mustard	plasma membrane	65.07	69.25
AT5G05630.1	Thale cress	plasma membrane	70.48	69.18
EES13409	Sorghum	plasma membrane	70.69	68.97
TraesCS5B01G019600.1	Wheat	mitochondrion, plasma membrane	70.89	68.89
CDX70141	Canola	plasma membrane, plastid	69.65	68.79
TraesCS5A01G022700.1	Wheat	mitochondrion, plasma membrane	70.69	68.69
CDX98852	Canola	plasma membrane, plastid	69.65	68.51
Solyc08g005540.1.1	Tomato	cytosol, peroxisome, plasma membrane	75.47	68.49
Bra009122.1-P	Field mustard	plasma membrane	69.85	68.43
TraesCS5D01G028100.1	Wheat	plasma membrane	70.06	68.08
TraesCS6D01G245700.1	Wheat	plasma membrane	70.48	68.07
CDY12286	Canola	plasma membrane	55.3	68.03
HORVU5Hr1G006170.3	Barley	golgi, plasma membrane	70.89	67.66
Solyc08g075710.2.1	Tomato	plastid	75.05	67.6
Zm00001d017728_P001	Maize	plasma membrane	70.89	64.95
Os02t0700500-01	Rice	cytosol, peroxisome, plasma membrane	71.1	64.41
TraesCS6A01G269200.2	Wheat	plasma membrane	70.27	64.02
OQU85562	Sorghum	peroxisome, plasma membrane, vacuole	71.31	63.75
TraesCS6B01G296500.2	Wheat	plasma membrane	69.65	63.09
Os03t0576900-01	Rice	plastid	70.06	61.27
HORVU6Hr1G068230.1	Barley	plastid	69.44	58.09
VIT_03s0091g00600.t01	Wine grape	plasma membrane	55.09	52.58
VIT_06s0004g00790.t01	Wine grape	plasma membrane	46.36	46.95
VIT_06s0004g00800.t01	Wine grape	plasma membrane	43.24	43.06

Protein Annotations

Gene3D:1.20.1740.10	EntrezGene:100249510	wikigene:100249510	MapMan:24.2.3.5.1	InterPro:AA/rel_permease1	ProteinID:CCB60366
ProteinID:CCB60366.1	UniProt:F6I0A0	EMBL:FN596505	GO:GO:0003333	GO:GO:0003674	GO:GO:0005215
GO:GO:0005575	GO:GO:0005623	GO:GO:0005886	GO:GO:0005887	GO:GO:0006810	GO:GO:0008150
GO:GO:0015171	GO:GO:0015179	GO:GO:0015297	GO:GO:0016020	GO:GO:0016021	GO:GO:0022857
GO:GO:0055085	GO:GO:1902475	EntrezGene:LOC100249510	wikigene:LOC100249510	PFAM:PF13520	PIRSF:PIRSF006060
PANTHER:PTHR11785	PANTHER:PTHR11785:SF338	TMHMM:TMhelix	UniParc:UPI000210971A	ArrayExpress:VIT_02s0033g01310	EnsemblPlantsGene:VIT_02s0033g01310
EnsemblPlants:VIT_02s0033g01310.t01	unigene:Vvi.22899	RefSeq:XP_002263817	RefSeq:XP_002263817.1	SEG:seg	:

Description

No Description!

Coordinates

chr2:-:16702815..16707266

Molecular Weight (calculated)

52862.7 Da

IEP (calculated)

5.838

GRAVY (calculated)

0.679

Length

481 amino acids

Sequence
(BLAST)

001: MGECNGVEYV GVGVGVDELA PLRVDNFKKV SVLPLVFLIF YEVSGGPFGI EDSVGAAGPL LALLGFLIFP FIWSIPEALI TAEMGTMFPE NGGYVVWVSS
101: ALGPYWGFQQ GWMKWLSGVI DNALYPVLFL DYLDSSVPAL SGGLPRIAAV LALTVVLTYM NYRGLTIVGW AAILLGVFSI LPFVIMGLVA IPKLKPSRWL
201: VVEKDVDWNL YLNTLFWNLN YWDSISTLAG EVENPKRTLP KALFYALILV VLGYFFPLLI GTGAIPLDRE AWTDGYFSDV AKMIGGVWLG WWITGAAAAS
301: NLGMFVAEMS SDSFQLLGMA ERGMLPSIFA KRSHYGTPLI GILFSASGVL LLSWMSFQEI IAAENFLYCF GMILEFIAFV RLRIKYPAAS RPYKIPLGTV
401: GSILMCVPPT ILICIVLALS SLKVAVVSLI AVIIGLVLQP CLKCIERKRW LKFSVSSDLP DLHCENHENV EPLLKKPKTT R

Best Arabidopsis Sequence Match ( AT1G31830.1 )
(BLAST)

001: MQKRRIITVN PSASIEMSQY ENNEVPYSSV GADEVPSSPP KATDKIRKVS MLPLVFLIFY EVSGGPFGVE DSVNAAGPLL ALLGFVIFPF IWSIPEALIT
101: AEMGTMYPEN GGYVVWVSSA LGPFWGFQQG WMKWLSGVID NALYPVLFLD YLKSGVPALG SGLPRVASIL VLTILLTYLN YRGLTIVGWV AVLMGVFSIL
201: PFAVMGLISI PQLEPSRWLV MDLGNVNWNL YLNTLFWNLN YWDSISTLAG EVENPNHTLP KALFYGVILV ACSYIFPLLA GIGAIPLERE KWTDGYFSDV
301: AKALGGAWLR WWVQAAAATS NMGMFIAEMS SDSFQLLGMA ERGMLPEFFA KRSRYGTPLL GILFSASGVV LLSWLSFQEI VAAENLLYCV GMILEFIAFV
401: RMRMKHPAAS RPYKIPIGTT GSILMCIPPT ILICAVVALS SLKVAAVSIV MMIIGFLIHP LLNHMDRKRW VKFSISSDLP DLQQQTREYE ETLIR

Arabidopsis Description

Probable polyamine transporter At1g31830 [Source:UniProtKB/Swiss-Prot;Acc:Q9C6S5]
SUBAcon: [mitochondrion,plasma membrane,golgi]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.