Factsheet for Solyc08g075710.2.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 5
cytosol 1
plasma membrane 2
peroxisome 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc08g078100.1.1	Tomato	plasma membrane	75.28	85.9
Solyc08g005540.1.1	Tomato	cytosol, peroxisome, plasma membrane	77.15	77.74
KRH76400	Soybean	plasma membrane	69.66	76.54
VIT_02s0033g01310.t01	Wine grape	plasma membrane	67.6	75.05
KRH07711	Soybean	plasma membrane	66.29	74.84
KRH39685	Soybean	cytosol, peroxisome, plasma membrane, plastid	70.6	73.06
GSMUA_Achr4P11590_001	Banana	plasma membrane	41.76	71.25
VIT_02s0033g01320.t01	Wine grape	plasma membrane	62.73	70.82
GSMUA_Achr9P23200_001	Banana	plasma membrane	40.82	70.1
CDY12285	Canola	golgi, peroxisome, plasma membrane, plastid	64.79	69.48
AT1G31830.1	Thale cress	golgi, mitochondrion, plasma membrane	64.23	69.29
Bra023210.1-P	Field mustard	golgi, peroxisome, plasma membrane, plastid	64.61	69.28
Zm00001d024516_P001	Maize	plasma membrane	63.86	69.17
EES13409	Sorghum	plasma membrane	63.86	69.17
CDY63076	Canola	endoplasmic reticulum, plasma membrane, vacuole	48.13	68.53
GSMUA_Achr1P27820_001	Banana	plasma membrane	54.68	67.59
TraesCS6D01G245700.1	Wheat	plasma membrane	62.36	66.87
TraesCS5A01G022700.1	Wheat	mitochondrion, plasma membrane	61.8	66.67
TraesCS5D01G028100.1	Wheat	plasma membrane	61.42	66.26
TraesCS5B01G019600.1	Wheat	mitochondrion, plasma membrane	61.42	66.26
Solyc01g111800.2.1	Tomato	plasma membrane	56.74	65.73
AT5G05630.1	Thale cress	plasma membrane	60.3	65.71
Bra023209.1-P	Field mustard	plasma membrane	55.62	65.71
CDX98852	Canola	plasma membrane, plastid	60.11	65.64
AT1G31820.1	Thale cress	plasma membrane	58.99	65.35
CDX70141	Canola	plasma membrane, plastid	59.55	65.3
Solyc09g092420.1.1	Tomato	plasma membrane	34.83	65.26
HORVU5Hr1G006170.3	Barley	golgi, plasma membrane	61.24	64.88
Bra009122.1-P	Field mustard	plasma membrane	59.55	64.77
Zm00001d017728_P001	Maize	plasma membrane	62.92	64.0
TraesCS6A01G269200.2	Wheat	plasma membrane	62.73	63.45
CDY12286	Canola	plasma membrane	46.44	63.43
Os02t0700500-01	Rice	cytosol, peroxisome, plasma membrane	62.92	63.28
OQU85562	Sorghum	peroxisome, plasma membrane, vacuole	63.11	62.64
TraesCS6B01G296500.2	Wheat	plasma membrane	62.17	62.52
Os03t0576900-01	Rice	plastid	63.86	62.0
HORVU6Hr1G068230.1	Barley	plastid	61.98	57.57
Solyc10g049640.1.1	Tomato	plasma membrane	45.88	50.0
Solyc01g034080.1.1	Tomato	plasma membrane	39.51	44.89
Solyc01g005920.2.1	Tomato	plasma membrane	38.39	43.16

Protein Annotations

Gene3D:1.20.1740.10	MapMan:24.2.3.5.1	InterPro:AA/rel_permease1	GO:GO:0003333	GO:GO:0003674	GO:GO:0005215
GO:GO:0005575	GO:GO:0005623	GO:GO:0005886	GO:GO:0005887	GO:GO:0006810	GO:GO:0008150
GO:GO:0015171	GO:GO:0015179	GO:GO:0015297	GO:GO:0016020	GO:GO:0016021	GO:GO:0022857
GO:GO:0055085	GO:GO:1902475	UniProt:K4CMT8	PFAM:PF13520	PIRSF:PIRSF006060	PANTHER:PTHR11785
PANTHER:PTHR11785:SF338	EnsemblPlantsGene:Solyc08g075710.2	EnsemblPlants:Solyc08g075710.2.1	TMHMM:TMhelix	UniParc:UPI000276B8BC	SEG:seg

Description

No Description!

Coordinates

chr8:+:59838882..59845338

Molecular Weight (calculated)

58796.8 Da

IEP (calculated)

8.665

GRAVY (calculated)

0.539

Length

534 amino acids

Sequence
(BLAST)

001: MVPTTTTTSS SETLQNSSIS VADKKTSQQN GDNNNQVLRG VNVGTFKIEL HFFMKLRVSA QREAAIPMGD YNGAEYIGIN EVPSPRANNS NKVSLLPLIF
101: LIFYEVSGGP FGVEDTVQAA GPLFALLGFL IFPLIWSVPE ALITAEMGTM FPENGGYVVW VSSALGPYWG FQQGWMKWLS GVIDNALYPV MFLDYLKSAI
201: PALGGGLPRI VAVLALTVVL TYMNYRGLTI VGWVAVSLGI LSMLPFVVMG LISIPKIRPE RWLVADVHSI DWNLYLNTLF WNLNYWDSIS TLAGEVRNPK
301: KTLPKALFYA VLLVVLSYLF PLLIGTGAVP LERELWTDGY FSDIAKILGG VWLRFWLQGA AAVSNMGMFV AEMSSDSFQL LGMAERGMLP EFFAKRSRHG
401: TPILGIIFSA SGVLLLSWLS FQEIVAAENF LYCFGMILEF IAFVWLRIKY PNAPRPFKIP GGIIGAILLC VPPAILIGVV LAFSTIKIMI VSLAAVAIGM
501: VLQPCIKLIE RKRWLKFSTS SDLPDITAHG PLIR

Best Arabidopsis Sequence Match ( AT1G31830.1 )
(BLAST)

001: MQKRRIITVN PSASIEMSQY ENNEVPYSSV GADEVPSSPP KATDKIRKVS MLPLVFLIFY EVSGGPFGVE DSVNAAGPLL ALLGFVIFPF IWSIPEALIT
101: AEMGTMYPEN GGYVVWVSSA LGPFWGFQQG WMKWLSGVID NALYPVLFLD YLKSGVPALG SGLPRVASIL VLTILLTYLN YRGLTIVGWV AVLMGVFSIL
201: PFAVMGLISI PQLEPSRWLV MDLGNVNWNL YLNTLFWNLN YWDSISTLAG EVENPNHTLP KALFYGVILV ACSYIFPLLA GIGAIPLERE KWTDGYFSDV
301: AKALGGAWLR WWVQAAAATS NMGMFIAEMS SDSFQLLGMA ERGMLPEFFA KRSRYGTPLL GILFSASGVV LLSWLSFQEI VAAENLLYCV GMILEFIAFV
401: RMRMKHPAAS RPYKIPIGTT GSILMCIPPT ILICAVVALS SLKVAAVSIV MMIIGFLIHP LLNHMDRKRW VKFSISSDLP DLQQQTREYE ETLIR

Arabidopsis Description

Probable polyamine transporter At1g31830 [Source:UniProtKB/Swiss-Prot;Acc:Q9C6S5]
SUBAcon: [mitochondrion,plasma membrane,golgi]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.