Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane
Predictor Summary:
Predictor Summary:
- nucleus 1
- plasma membrane 4
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- golgi 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY12286 | Canola | plasma membrane | 69.09 | 85.17 |
| Bra023209.1-P | Field mustard | plasma membrane | 79.67 | 84.96 |
| CDY63076 | Canola | endoplasmic reticulum, plasma membrane, vacuole | 65.35 | 84.0 |
| AT1G31830.1 | Thale cress | golgi, mitochondrion, plasma membrane | 76.76 | 74.75 |
| VIT_02s0033g01310.t01 | Wine grape | plasma membrane | 69.71 | 69.85 |
| PGSC0003DMT400067464 | Potato | plasma membrane | 67.01 | 69.02 |
| Solyc08g078100.1.1 | Tomato | plasma membrane | 66.6 | 68.59 |
| PGSC0003DMT400047497 | Potato | plasma membrane | 65.77 | 67.59 |
| GSMUA_Achr4P11590_001 | Banana | plasma membrane | 42.95 | 66.13 |
| VIT_02s0033g01320.t01 | Wine grape | plasma membrane | 64.52 | 65.75 |
| KRH07711 | Soybean | plasma membrane | 64.52 | 65.75 |
| KRH76400 | Soybean | plasma membrane | 65.56 | 65.02 |
| GSMUA_Achr9P23200_001 | Banana | plasma membrane | 41.7 | 64.63 |
| GSMUA_Achr1P27820_001 | Banana | plasma membrane | 57.68 | 64.35 |
| AT5G05630.1 | Thale cress | plasma membrane | 63.9 | 62.86 |
| TraesCS5A01G022700.1 | Wheat | mitochondrion, plasma membrane | 63.49 | 61.82 |
| Zm00001d024516_P001 | Maize | plasma membrane | 62.86 | 61.46 |
| EES13409 | Sorghum | plasma membrane | 62.66 | 61.26 |
| KRH39685 | Soybean | cytosol, peroxisome, plasma membrane, plastid | 65.56 | 61.24 |
| TraesCS5B01G019600.1 | Wheat | mitochondrion, plasma membrane | 62.86 | 61.21 |
| TraesCS5D01G028100.1 | Wheat | plasma membrane | 62.86 | 61.21 |
| HORVU5Hr1G006170.3 | Barley | golgi, plasma membrane | 63.28 | 60.52 |
| TraesCS6D01G245700.1 | Wheat | plasma membrane | 62.24 | 60.24 |
| Solyc08g005540.1.1 | Tomato | cytosol, peroxisome, plasma membrane | 64.94 | 59.06 |
| Solyc08g075710.2.1 | Tomato | plastid | 65.35 | 58.99 |
| Zm00001d017728_P001 | Maize | plasma membrane | 63.28 | 58.1 |
| Os02t0700500-01 | Rice | cytosol, peroxisome, plasma membrane | 63.07 | 57.25 |
| OQU85562 | Sorghum | peroxisome, plasma membrane, vacuole | 63.69 | 57.06 |
| TraesCS6A01G269200.2 | Wheat | plasma membrane | 61.83 | 56.44 |
| TraesCS6B01G296500.2 | Wheat | plasma membrane | 61.2 | 55.56 |
| Os03t0576900-01 | Rice | plastid | 61.83 | 54.18 |
| AT3G19553.1 | Thale cress | plasma membrane | 53.53 | 53.86 |
| HORVU6Hr1G068230.1 | Barley | plastid | 61.41 | 51.48 |
| AT3G13620.1 | Thale cress | plasma membrane | 43.36 | 43.72 |
Protein Annotations
| Gene3D:1.20.1740.10 | MapMan:24.2.3.5.1 | EntrezGene:840072 | InterPro:AA/rel_permease1 | ProteinID:AAG50712.1 | ProteinID:AEE31399.1 |
| ArrayExpress:AT1G31820 | EnsemblPlantsGene:AT1G31820 | RefSeq:AT1G31820 | TAIR:AT1G31820 | RefSeq:AT1G31820-TAIR-G | EnsemblPlants:AT1G31820.1 |
| TAIR:AT1G31820.1 | Unigene:At.40262 | GO:GO:0003333 | GO:GO:0003674 | GO:GO:0005215 | GO:GO:0005575 |
| GO:GO:0005623 | GO:GO:0005886 | GO:GO:0005887 | GO:GO:0006810 | GO:GO:0008150 | GO:GO:0015171 |
| GO:GO:0015179 | GO:GO:0015203 | GO:GO:0015293 | GO:GO:0015297 | GO:GO:0015846 | GO:GO:0016020 |
| GO:GO:0016021 | GO:GO:0022857 | GO:GO:0055085 | GO:GO:1902047 | GO:GO:1902475 | RefSeq:NP_174465.1 |
| PFAM:PF13520 | PIRSF:PIRSF006060 | PO:PO:0000013 | PO:PO:0000230 | PO:PO:0000293 | PO:PO:0001054 |
| PO:PO:0001185 | PO:PO:0007064 | PO:PO:0007095 | PO:PO:0007103 | PO:PO:0007115 | PO:PO:0007123 |
| PO:PO:0007611 | PO:PO:0007616 | PO:PO:0008019 | PO:PO:0009005 | PO:PO:0009006 | PO:PO:0009009 |
| PO:PO:0009025 | PO:PO:0009029 | PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 |
| PO:PO:0009047 | PO:PO:0020030 | PO:PO:0020100 | PO:PO:0020137 | PO:PO:0025022 | PO:PO:0025281 |
| PANTHER:PTHR11785 | PANTHER:PTHR11785:SF338 | UniProt:Q9C6S4 | TMHMM:TMhelix | UniParc:UPI0000048313 | SEG:seg |
Description
Probable polyamine transporter At1g31820 [Source:UniProtKB/Swiss-Prot;Acc:Q9C6S4]
Coordinates
chr1:-:11416451..11418464
Molecular Weight (calculated)
52602.1 Da
IEP (calculated)
4.640
GRAVY (calculated)
0.655
Length
482 amino acids
Sequence
(BLAST)
(BLAST)
001: MGDYNMNEFA YGNLYDDDDG DVGGSSKEGN NSIQKVSMLP LVFLIFYEVS GGPFGAEGSV NAAGPLLALL GFVIFPFIWC IPEALITAEM STMFPINGGF
101: VVWVSSALGT FWGFQVGWMK WLCGVIDNAL YPVLFLDYLK SAVPALATGL PRVASILILT LLLTYLNYRG LTIVGWTAVF MGVFSMLPFA VMSLVSIPQL
201: EPSRWLVMDL GNVNWNLYLN TLLWNLNYWD SVSTLAGEVA NPKKTLPKAL CYGVIFVALS NFLPLLSGTG AIPLDRELWT DGYLAEVAKA IGGGWLQLWV
301: QAAAATSNMG MFLAEMSSDS FQLLGMAELG ILPEIFAQRS RYGTPLLGIL FSASGVLLLS GLSFQEIIAA ENLLYCGGMI LEFIAFVRLR KKHPAASRPY
401: KIPVGTVGSI LICVPPIVLI CLVIVLSTIK VALVSFVMVV IGFLMKPCLN HMDGKKWVKF SVCSDLAEFQ KENLDCEESL LR
101: VVWVSSALGT FWGFQVGWMK WLCGVIDNAL YPVLFLDYLK SAVPALATGL PRVASILILT LLLTYLNYRG LTIVGWTAVF MGVFSMLPFA VMSLVSIPQL
201: EPSRWLVMDL GNVNWNLYLN TLLWNLNYWD SVSTLAGEVA NPKKTLPKAL CYGVIFVALS NFLPLLSGTG AIPLDRELWT DGYLAEVAKA IGGGWLQLWV
301: QAAAATSNMG MFLAEMSSDS FQLLGMAELG ILPEIFAQRS RYGTPLLGIL FSASGVLLLS GLSFQEIIAA ENLLYCGGMI LEFIAFVRLR KKHPAASRPY
401: KIPVGTVGSI LICVPPIVLI CLVIVLSTIK VALVSFVMVV IGFLMKPCLN HMDGKKWVKF SVCSDLAEFQ KENLDCEESL LR
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.