Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane
Predictor Summary:
Predictor Summary:
- plastid 2
- plasma membrane 2
- mitochondrion 1
- peroxisome 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX70141 | Canola | plasma membrane, plastid | 78.98 | 79.47 |
| CDX98852 | Canola | plasma membrane, plastid | 78.37 | 78.53 |
| Bra009122.1-P | Field mustard | plasma membrane | 78.37 | 78.21 |
| Solyc08g078100.1.1 | Tomato | plasma membrane | 68.57 | 71.79 |
| PGSC0003DMT400067464 | Potato | plasma membrane | 68.16 | 71.37 |
| VIT_02s0033g01310.t01 | Wine grape | plasma membrane | 69.18 | 70.48 |
| PGSC0003DMT400047497 | Potato | plasma membrane | 66.73 | 69.72 |
| KRH76400 | Soybean | plasma membrane | 67.55 | 68.11 |
| VIT_02s0033g01320.t01 | Wine grape | plasma membrane | 65.71 | 68.08 |
| KRH07711 | Soybean | plasma membrane | 65.71 | 68.08 |
| AT1G31830.1 | Thale cress | golgi, mitochondrion, plasma membrane | 67.55 | 66.87 |
| GSMUA_Achr4P11590_001 | Banana | plasma membrane | 42.65 | 66.77 |
| GSMUA_Achr1P27820_001 | Banana | plasma membrane | 58.16 | 65.97 |
| GSMUA_Achr9P23200_001 | Banana | plasma membrane | 41.02 | 64.63 |
| AT1G31820.1 | Thale cress | plasma membrane | 62.86 | 63.9 |
| KRH39685 | Soybean | cytosol, peroxisome, plasma membrane, plastid | 66.73 | 63.37 |
| EES13409 | Sorghum | plasma membrane | 63.47 | 63.08 |
| Zm00001d024516_P001 | Maize | plasma membrane | 62.65 | 62.27 |
| Solyc08g005540.1.1 | Tomato | cytosol, peroxisome, plasma membrane | 67.35 | 62.26 |
| TraesCS6D01G245700.1 | Wheat | plasma membrane | 63.27 | 62.25 |
| TraesCS5A01G022700.1 | Wheat | mitochondrion, plasma membrane | 62.86 | 62.22 |
| TraesCS5B01G019600.1 | Wheat | mitochondrion, plasma membrane | 62.86 | 62.22 |
| TraesCS5D01G028100.1 | Wheat | plasma membrane | 62.65 | 62.02 |
| HORVU5Hr1G006170.3 | Barley | golgi, plasma membrane | 63.27 | 61.51 |
| Solyc08g075710.2.1 | Tomato | plastid | 65.71 | 60.3 |
| Zm00001d017728_P001 | Maize | plasma membrane | 63.47 | 59.24 |
| TraesCS6A01G269200.2 | Wheat | plasma membrane | 63.67 | 59.09 |
| OQU85562 | Sorghum | peroxisome, plasma membrane, vacuole | 63.88 | 58.18 |
| TraesCS6B01G296500.2 | Wheat | plasma membrane | 62.65 | 57.82 |
| Os02t0700500-01 | Rice | cytosol, peroxisome, plasma membrane | 62.04 | 57.25 |
| Os03t0576900-01 | Rice | plastid | 62.45 | 55.64 |
| AT3G19553.1 | Thale cress | plasma membrane | 53.47 | 54.7 |
| HORVU6Hr1G068230.1 | Barley | plastid | 63.06 | 53.74 |
| AT3G13620.1 | Thale cress | plasma membrane | 42.65 | 43.72 |
Protein Annotations
| Gene3D:1.20.1740.10 | MapMan:24.2.3.5.1 | EntrezGene:830446 | InterPro:AA/rel_permease1 | ProteinID:AED90901.1 | EMBL:AK119108 |
| ArrayExpress:AT5G05630 | EnsemblPlantsGene:AT5G05630 | RefSeq:AT5G05630 | TAIR:AT5G05630 | RefSeq:AT5G05630-TAIR-G | EnsemblPlants:AT5G05630.1 |
| TAIR:AT5G05630.1 | ProteinID:BAB09657.1 | EMBL:BT008298 | GO:GO:0003333 | GO:GO:0003674 | GO:GO:0005215 |
| GO:GO:0005575 | GO:GO:0005623 | GO:GO:0005886 | GO:GO:0005887 | GO:GO:0006810 | GO:GO:0006950 |
| GO:GO:0008150 | GO:GO:0009408 | GO:GO:0009628 | GO:GO:0015171 | GO:GO:0015179 | GO:GO:0015203 |
| GO:GO:0015293 | GO:GO:0015297 | GO:GO:0015839 | GO:GO:0015846 | GO:GO:0016020 | GO:GO:0016021 |
| GO:GO:0022857 | GO:GO:0055085 | GO:GO:1902047 | GO:GO:1902475 | RefSeq:NP_196182.1 | PFAM:PF13520 |
| PIRSF:PIRSF006060 | PO:PO:0000037 | PO:PO:0000293 | PO:PO:0001078 | PO:PO:0007611 | PO:PO:0009010 |
| PO:PO:0009046 | PO:PO:0025022 | PANTHER:PTHR11785 | PANTHER:PTHR11785:SF338 | UniProt:Q9FFL1 | TMHMM:TMhelix |
| UniParc:UPI0000048AD0 | SEG:seg | : | : | : | : |
Description
RMV1Polyamine transporter RMV1 [Source:UniProtKB/Swiss-Prot;Acc:Q9FFL1]
Coordinates
chr5:+:1682301..1684504
Molecular Weight (calculated)
53696.9 Da
IEP (calculated)
9.535
GRAVY (calculated)
0.611
Length
490 amino acids
Sequence
(BLAST)
(BLAST)
001: MTELSSPNLD SASQKPRIST ENPPPPPPHI SIGVTTGDPA TSPARTVNQI KKITVLPLVF LIFYEVSGGP FGIEDSVKAA GPLLAIVGFI VFPFIWSIPE
101: ALITAEMGTM FPENGGYVVW VTLAMGPYWG FQQGWVKWLS GVIDNALYPI LFLDYLKSGI PILGSGIPRV AAILVLTVAL TYLNYRGLSI VGVAAVLLGV
201: FSILPFVVMS FMSIPKLKPS RWLVVSKKMK GVNWSLYLNT LFWNLNYWDS VSTLTGEVEN PSKTLPRALF YALLLVVFSY IFPVLTGTGA IALDQKLWTD
301: GYFADIGKVI GGVWLGWWIQ AAAATSNMGM FLAEMSSDSF QLLGMAERGM LPEVFAKRSR YRTPWVGILF SASGVIILSW LSFQEIVAAE NLLYCFGMVL
401: EFITFVRLRM KYPAASRPFK IPVGVLGSVL MCIPPTVLIG VIMAFTNLKV ALVSLAAIVI GLVLQPCLKQ VEKKGWLKFS TSSHLPNLME
101: ALITAEMGTM FPENGGYVVW VTLAMGPYWG FQQGWVKWLS GVIDNALYPI LFLDYLKSGI PILGSGIPRV AAILVLTVAL TYLNYRGLSI VGVAAVLLGV
201: FSILPFVVMS FMSIPKLKPS RWLVVSKKMK GVNWSLYLNT LFWNLNYWDS VSTLTGEVEN PSKTLPRALF YALLLVVFSY IFPVLTGTGA IALDQKLWTD
301: GYFADIGKVI GGVWLGWWIQ AAAATSNMGM FLAEMSSDSF QLLGMAERGM LPEVFAKRSR YRTPWVGILF SASGVIILSW LSFQEIVAAE NLLYCFGMVL
401: EFITFVRLRM KYPAASRPFK IPVGVLGSVL MCIPPTVLIG VIMAFTNLKV ALVSLAAIVI GLVLQPCLKQ VEKKGWLKFS TSSHLPNLME
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.