Factsheet for Zm00001d017728_P001

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

plasma membrane 2
mitochondrion 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	mitochondrion, peroxisome, plasma membrane
MultiLoc:	plasma membrane
PProwler:	mitochondrion
WoLF PSORT:	plasma membrane
YLoc:	peroxisome

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
OQU85562	Sorghum	peroxisome, plasma membrane, vacuole	93.52	91.26
TraesCS6D01G245700.1	Wheat	plasma membrane	77.9	82.13
Os02t0700500-01	Rice	cytosol, peroxisome, plasma membrane	82.86	81.92
TraesCS6A01G269200.2	Wheat	plasma membrane	79.43	78.98
TraesCS6B01G296500.2	Wheat	plasma membrane	78.1	77.21
HORVU6Hr1G068230.1	Barley	plastid	80.0	73.04
PGSC0003DMT400047497	Potato	plasma membrane	64.76	72.49
GSMUA_Achr1P27820_001	Banana	plasma membrane	59.62	72.45
Solyc08g078100.1.1	Tomato	plasma membrane	64.38	72.22
PGSC0003DMT400067464	Potato	plasma membrane	64.19	72.01
VIT_02s0033g01310.t01	Wine grape	plasma membrane	64.95	70.89
VIT_03s0038g02860.t01	Wine grape	plasma membrane	64.38	69.83
KRG90652	Soybean	plasma membrane	61.9	69.74
KRH07711	Soybean	plasma membrane	61.9	68.71
KRH76400	Soybean	plasma membrane	63.05	68.11
Bra023210.1-P	Field mustard	golgi, peroxisome, plasma membrane, plastid	63.05	66.47
CDY12285	Canola	golgi, peroxisome, plasma membrane, plastid	62.86	66.27
AT1G31830.1	Thale cress	golgi, mitochondrion, plasma membrane	62.29	66.06
Zm00001d024516_P001	Maize	plasma membrane	61.9	65.92
VIT_02s0033g01320.t01	Wine grape	plasma membrane	59.24	65.75
CDY63076	Canola	endoplasmic reticulum, plasma membrane, vacuole	46.86	65.6
PGSC0003DMT400008784	Potato	plasma membrane	57.52	64.95
Solyc08g005540.1.1	Tomato	cytosol, peroxisome, plasma membrane	65.52	64.91
KRH39685	Soybean	cytosol, peroxisome, plasma membrane, plastid	63.62	64.73
Solyc01g111800.2.1	Tomato	plasma membrane	56.0	63.77
AT5G05630.1	Thale cress	plasma membrane	59.24	63.47
CDX70141	Canola	plasma membrane, plastid	58.86	63.45
AT1G31820.1	Thale cress	plasma membrane	58.1	63.28
KRH36101	Soybean	plasma membrane	32.38	63.2
Solyc08g075710.2.1	Tomato	plastid	64.0	62.92
Solyc09g092420.1.1	Tomato	plasma membrane	34.1	62.81
CDX98852	Canola	plasma membrane, plastid	58.29	62.58
Bra009122.1-P	Field mustard	plasma membrane	58.1	62.12
Bra023209.1-P	Field mustard	plasma membrane	52.76	61.28
CDY12286	Canola	plasma membrane	43.81	58.82
Zm00001d030832_P001	Maize	plasma membrane	46.48	49.09
Zm00001d029319_P001	Maize	endoplasmic reticulum, plasma membrane, plastid, vacuole	12.95	46.26
Zm00001d029321_P001	Maize	plasma membrane	41.52	44.86
Zm00001d029320_P001	Maize	plasma membrane	25.33	42.77
Zm00001d029318_P001	Maize	plasma membrane	24.38	42.38
Zm00001d029314_P001	Maize	plasma membrane	38.1	41.67
KRH57856	Soybean	cytosol	17.33	37.76

Protein Annotations

Gene3D:1.20.1740.10	MapMan:24.2.3.5.1	UniProt:A0A1D6HH20	InterPro:AA/rel_permease1	ProteinID:AQK73856.1	GO:GO:0003333
GO:GO:0003674	GO:GO:0005215	GO:GO:0005575	GO:GO:0006810	GO:GO:0008150	GO:GO:0015171
GO:GO:0015203	GO:GO:0015846	GO:GO:0016020	GO:GO:0016021	GO:GO:0022857	GO:GO:0055085
GO:GO:1902047	PFAM:PF13520	PIRSF:PIRSF006060	PANTHER:PTHR11785	PANTHER:PTHR11785:SF434	TMHMM:TMhelix
UniParc:UPI000845325A	EnsemblPlantsGene:Zm00001d017728	EnsemblPlants:Zm00001d017728_P001	EnsemblPlants:Zm00001d017728_T001	SEG:seg	:

Description

Polyamine transporter RMV1

Coordinates

chr5:-:205371599..205377633

Molecular Weight (calculated)

56207.8 Da

IEP (calculated)

4.694

GRAVY (calculated)

0.554

Length

525 amino acids

Sequence
(BLAST)

001: MGDARSEVPL AVLQDRQDST ATPQLPADAG SGTGQQEKHA APADVTPPMG ECRTEYRGLP DANGEDAGTV PAALRKVSIV PLVFLIFYEV SGGPFGIEDS
101: VGAAGPLLAI VGFLVLPVIW SIPEALITAE LGTMFPENGG YVVWVASALG PYWGFQQGWV KWLSGVIDNA LYPVLFLDYL KSAVPALGGG PPRAFAVLGL
201: TAVLTLLNYR GLTVVGWVAI CLGVFSILPF FVMGLISLPR LRPARWLVVD LHNVDWNLYL NTLFWNLNYW DSISTLSGEV DNPGKTLPKA LFYAVIFVVV
301: GYLYPLLAGT GAVPLDRGQW SDGYFSDLAK LLGGAWLMWW VQAAAALSNM GMFVAEMSSD SYQLLGMAER GMLPAFFARR SRHGTPLVGI LFSASGVLLL
401: SSLSFEEIVA AENFLYCFGM LLEFIAFVLL RVRRPDAPRP YRVPLGTAGC VAMLVPPTAL IVVVLALSTL KVALVSLGAV AIGLVLQPAL RFVETKGLLR
501: FAVNTDLPDI GVGQSSASAE EPVTP

Best Arabidopsis Sequence Match ( AT1G31830.1 )
(BLAST)

001: MQKRRIITVN PSASIEMSQY ENNEVPYSSV GADEVPSSPP KATDKIRKVS MLPLVFLIFY EVSGGPFGVE DSVNAAGPLL ALLGFVIFPF IWSIPEALIT
101: AEMGTMYPEN GGYVVWVSSA LGPFWGFQQG WMKWLSGVID NALYPVLFLD YLKSGVPALG SGLPRVASIL VLTILLTYLN YRGLTIVGWV AVLMGVFSIL
201: PFAVMGLISI PQLEPSRWLV MDLGNVNWNL YLNTLFWNLN YWDSISTLAG EVENPNHTLP KALFYGVILV ACSYIFPLLA GIGAIPLERE KWTDGYFSDV
301: AKALGGAWLR WWVQAAAATS NMGMFIAEMS SDSFQLLGMA ERGMLPEFFA KRSRYGTPLL GILFSASGVV LLSWLSFQEI VAAENLLYCV GMILEFIAFV
401: RMRMKHPAAS RPYKIPIGTT GSILMCIPPT ILICAVVALS SLKVAAVSIV MMIIGFLIHP LLNHMDRKRW VKFSISSDLP DLQQQTREYE ETLIR

Arabidopsis Description

Probable polyamine transporter At1g31830 [Source:UniProtKB/Swiss-Prot;Acc:Q9C6S5]
SUBAcon: [mitochondrion,plasma membrane,golgi]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.