Factsheet for VIT_03s0038g02860.t01

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

nucleus 1
plasma membrane 4
extracellular 1
endoplasmic reticulum 1
vacuole 2
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	nucleus, secretory
BaCelLo:	nucleus
MultiLoc:	plasma membrane
Plant-mPloc:	plasma membrane
PProwler:	secretory
WoLF PSORT:	vacuole
YLoc:	plasma membrane

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_02s0033g01310.t01	Wine grape	plasma membrane	76.45	76.92
KRG90652	Soybean	plasma membrane	73.97	76.82
GSMUA_Achr4P11590_001	Banana	plasma membrane	47.93	74.12
GSMUA_Achr9P23200_001	Banana	plasma membrane	46.69	72.67
PGSC0003DMT400008784	Potato	plasma membrane	69.01	71.83
GSMUA_Achr1P27820_001	Banana	plasma membrane	63.64	71.3
VIT_02s0033g01320.t01	Wine grape	plasma membrane	69.21	70.82
Solyc01g111800.2.1	Tomato	plasma membrane	67.36	70.72
Zm00001d024516_P001	Maize	plasma membrane	71.9	70.59
TraesCS5A01G022700.1	Wheat	mitochondrion, plasma membrane	71.9	70.3
EES13409	Sorghum	plasma membrane	71.28	69.98
TraesCS5B01G019600.1	Wheat	mitochondrion, plasma membrane	71.49	69.9
TraesCS5D01G028100.1	Wheat	plasma membrane	71.49	69.9
Solyc09g092420.1.1	Tomato	plasma membrane	41.12	69.82
HORVU5Hr1G006170.3	Barley	golgi, plasma membrane	71.9	69.05
KRH36101	Soybean	plasma membrane	38.22	68.77
TraesCS6D01G245700.1	Wheat	plasma membrane	67.98	66.06
Zm00001d017728_P001	Maize	plasma membrane	69.83	64.38
Os02t0700500-01	Rice	cytosol, peroxisome, plasma membrane	69.63	63.47
OQU85562	Sorghum	peroxisome, plasma membrane, vacuole	70.04	63.01
TraesCS6A01G269200.2	Wheat	plasma membrane	67.98	62.31
Os03t0576900-01	Rice	plastid	70.45	62.0
TraesCS6B01G296500.2	Wheat	plasma membrane	66.74	60.83
HORVU6Hr1G068230.1	Barley	plastid	66.94	56.35
VIT_03s0091g00600.t01	Wine grape	plasma membrane	52.69	50.6
VIT_06s0004g00790.t01	Wine grape	plasma membrane	45.66	46.53
VIT_06s0004g00800.t01	Wine grape	plasma membrane	43.8	43.89
KRH57856	Soybean	cytosol	19.83	39.83

Protein Annotations

Gene3D:1.20.1740.10	EntrezGene:100267611	wikigene:100267611	MapMan:24.2.3.5.1	InterPro:AA/rel_permease1	EMBL:AM470887
ProteinID:CAN68297	ProteinID:CAN68297.1	ProteinID:CCB60597	ProteinID:CCB60597.1	UniProt:F6I0Y1	EMBL:FN596508
GO:GO:0003333	GO:GO:0003674	GO:GO:0005215	GO:GO:0005575	GO:GO:0005623	GO:GO:0005886
GO:GO:0005887	GO:GO:0006810	GO:GO:0008150	GO:GO:0015171	GO:GO:0015179	GO:GO:0015297
GO:GO:0016020	GO:GO:0016021	GO:GO:0022857	GO:GO:0055085	GO:GO:1902475	EntrezGene:LOC100267611
wikigene:LOC100267611	PFAM:PF13520	PIRSF:PIRSF006060	PANTHER:PTHR11785	PANTHER:PTHR11785:SF338	TMHMM:TMhelix
UniParc:UPI000210A598	ArrayExpress:VIT_03s0038g02860	EnsemblPlantsGene:VIT_03s0038g02860	EnsemblPlants:VIT_03s0038g02860.t01	unigene:Vvi.658	RefSeq:XP_002280603
RefSeq:XP_002280603.1	RefSeq:XP_003631566	RefSeq:XP_003631566.1	SEG:seg	:	:

Description

No Description!

Coordinates

chr3:-:2025302..2028933

Molecular Weight (calculated)

53822.4 Da

IEP (calculated)

4.510

GRAVY (calculated)

0.536

Length

484 amino acids

Sequence
(BLAST)

001: MRNAEYVGLE DDASPKYDNF KKVSIIPLVF LIFYEVSGGP FGVEDTVQAA GPLLALLGFL LFPVIWSIPE ALITAEMGTM FPENGGYVVW VSSALGPYWG
101: FQQGWMKWLS GVIDNALYPV LFLDYLKSAI PGLEGGLPRI IAVLALTLAL TYMNYRGLTI VGWVAVLLGV FSILPFVVMG LVAIPELEPS RWFVIDLHNV
201: NWGLYLNTLF WNLNYWDSIS TLAGEVENPN KTLPKALFYA LILVVLGYFV PLLVGTGAIP LDREMWVDGY FADIAKILGG IWLRSWIQGA SALSNMGMFV
301: AEMSSDSFQL LGMAERGMLP DFFAKRSRYG TPLTGILFSA SGVILLSWLS FQEIVAAENF LYCFGMIMEF IAFVKLRMRY PAASRPYMIP VGTTGAILMC
401: IPPTLLICVV LALASFKVMV ISLLAVMIGL VMQPCLLYAE KKRWLRFSMS SDLPDFHSAY HGDTESGKQR REEEEEEEDG FASQ

Best Arabidopsis Sequence Match ( AT1G31830.1 )
(BLAST)

001: MQKRRIITVN PSASIEMSQY ENNEVPYSSV GADEVPSSPP KATDKIRKVS MLPLVFLIFY EVSGGPFGVE DSVNAAGPLL ALLGFVIFPF IWSIPEALIT
101: AEMGTMYPEN GGYVVWVSSA LGPFWGFQQG WMKWLSGVID NALYPVLFLD YLKSGVPALG SGLPRVASIL VLTILLTYLN YRGLTIVGWV AVLMGVFSIL
201: PFAVMGLISI PQLEPSRWLV MDLGNVNWNL YLNTLFWNLN YWDSISTLAG EVENPNHTLP KALFYGVILV ACSYIFPLLA GIGAIPLERE KWTDGYFSDV
301: AKALGGAWLR WWVQAAAATS NMGMFIAEMS SDSFQLLGMA ERGMLPEFFA KRSRYGTPLL GILFSASGVV LLSWLSFQEI VAAENLLYCV GMILEFIAFV
401: RMRMKHPAAS RPYKIPIGTT GSILMCIPPT ILICAVVALS SLKVAAVSIV MMIIGFLIHP LLNHMDRKRW VKFSISSDLP DLQQQTREYE ETLIR

Arabidopsis Description

Probable polyamine transporter At1g31830 [Source:UniProtKB/Swiss-Prot;Acc:Q9C6S5]
SUBAcon: [mitochondrion,plasma membrane,golgi]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.