Factsheet for PGSC0003DMT400008784

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

nucleus 1
plasma membrane 4
extracellular 1
endoplasmic reticulum 1
vacuole 2
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	nucleus, secretory
BaCelLo:	nucleus
MultiLoc:	plasma membrane
Plant-mPloc:	plasma membrane
PProwler:	secretory
WoLF PSORT:	vacuole
YLoc:	plasma membrane

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc01g111800.2.1	Tomato	plasma membrane	94.84	95.66
Solyc09g092420.1.1	Tomato	plasma membrane	54.19	88.42
PGSC0003DMT400067464	Potato	plasma membrane	69.68	69.23
VIT_03s0038g02860.t01	Wine grape	plasma membrane	71.83	69.01
KRG90652	Soybean	plasma membrane	67.53	67.38
PGSC0003DMT400047497	Potato	plasma membrane	67.96	67.38
GSMUA_Achr1P27820_001	Banana	plasma membrane	59.57	64.12
GSMUA_Achr4P11590_001	Banana	plasma membrane	42.58	63.26
TraesCS5A01G022700.1	Wheat	mitochondrion, plasma membrane	66.67	62.63
TraesCS5B01G019600.1	Wheat	mitochondrion, plasma membrane	66.45	62.42
Zm00001d024516_P001	Maize	plasma membrane	65.81	62.07
EES13409	Sorghum	plasma membrane	65.81	62.07
HORVU5Hr1G006170.3	Barley	golgi, plasma membrane	67.1	61.9
TraesCS5D01G028100.1	Wheat	plasma membrane	65.81	61.82
GSMUA_Achr9P23200_001	Banana	plasma membrane	41.08	61.41
KRH36101	Soybean	plasma membrane	35.27	60.97
TraesCS6D01G245700.1	Wheat	plasma membrane	64.52	60.24
Zm00001d017728_P001	Maize	plasma membrane	64.95	57.52
OQU85562	Sorghum	peroxisome, plasma membrane, vacuole	66.02	57.06
TraesCS6A01G269200.2	Wheat	plasma membrane	64.3	56.63
Os02t0700500-01	Rice	cytosol, peroxisome, plasma membrane	64.3	56.31
TraesCS6B01G296500.2	Wheat	plasma membrane	63.44	55.56
Os03t0576900-01	Rice	plastid	64.95	54.91
HORVU6Hr1G068230.1	Barley	plastid	63.87	51.65
PGSC0003DMT400013939	Potato	plasma membrane	52.9	49.6
PGSC0003DMT400082047	Potato	plasma membrane	43.44	42.26
PGSC0003DMT400028298	Potato	mitochondrion, plasma membrane	42.15	41.7
PGSC0003DMT400082048	Potato	plasma membrane	42.37	41.65
KRH57856	Soybean	cytosol	19.57	37.76

Protein Annotations

Gene3D:1.20.1740.10	EntrezGene:102595631	MapMan:24.2.3.5.1	InterPro:AA/rel_permease1	GO:GO:0003333	GO:GO:0003674
GO:GO:0005215	GO:GO:0005575	GO:GO:0006810	GO:GO:0008150	GO:GO:0015171	GO:GO:0016020
GO:GO:0016021	GO:GO:0022857	GO:GO:0055085	UniProt:M0ZV34	PFAM:PF13520	EnsemblPlantsGene:PGSC0003DMG400003415
PGSC:PGSC0003DMG400003415	EnsemblPlants:PGSC0003DMT400008784	PIRSF:PIRSF006060	PANTHER:PTHR11785	PANTHER:PTHR11785:SF434	TMHMM:TMhelix
UniParc:UPI0002967914	RefSeq:XP_006364505.1	:	:	:	:

Description

Neutral amino acid transport protein [Source:PGSC_GENE;Acc:PGSC0003DMG400003415]

Coordinates

chr1:+:88168554..88170661

Molecular Weight (calculated)

51563.8 Da

IEP (calculated)

6.280

GRAVY (calculated)

0.680

Length

465 amino acids

Sequence
(BLAST)

001: MEAEDNVEYS SLHRGGANFS KVSFVPLTFL IFYGVSGGPF GVEDTVRAAG PFLALVGYLI FPIIWSIPES LITAELSTMF PENGGYVVWV SKSFGPYWGF
101: QLGWVKWMSG VVDNALYPVL FLDYIKSSVP ALANGLPRTI AILALVIALT YLNYRGLTIV AWVATVLAIF TLLPFVIMGF IALPKLKPSR WFVVDLENVQ
201: WGLYLNTLFW NLNYWDSVST MSGEVEDPGK TIPKALFYAL PLVVSGYFFP LLFGTGAVPL HRDLWSDGYF SDIAKIIGGV WLRLWVQGAS AVSNMGMFLA
301: EMSGDAYQLL GMAERGMLPD FFAKRSRYGT PLISILFSAS GVVLLSCLSF QEIVAAENFM NCFGMILEFL SFVKLRIKYP AASRPYRIPL GTIGSILICL
401: PPTLFLLVVI ALCSFKVMIV SFLAILVGLI MQPCLVYCDK KKWLSFSVSS DLVELQTNYH QVVEA

Best Arabidopsis Sequence Match ( AT1G31830.1 )
(BLAST)

001: MQKRRIITVN PSASIEMSQY ENNEVPYSSV GADEVPSSPP KATDKIRKVS MLPLVFLIFY EVSGGPFGVE DSVNAAGPLL ALLGFVIFPF IWSIPEALIT
101: AEMGTMYPEN GGYVVWVSSA LGPFWGFQQG WMKWLSGVID NALYPVLFLD YLKSGVPALG SGLPRVASIL VLTILLTYLN YRGLTIVGWV AVLMGVFSIL
201: PFAVMGLISI PQLEPSRWLV MDLGNVNWNL YLNTLFWNLN YWDSISTLAG EVENPNHTLP KALFYGVILV ACSYIFPLLA GIGAIPLERE KWTDGYFSDV
301: AKALGGAWLR WWVQAAAATS NMGMFIAEMS SDSFQLLGMA ERGMLPEFFA KRSRYGTPLL GILFSASGVV LLSWLSFQEI VAAENLLYCV GMILEFIAFV
401: RMRMKHPAAS RPYKIPIGTT GSILMCIPPT ILICAVVALS SLKVAAVSIV MMIIGFLIHP LLNHMDRKRW VKFSISSDLP DLQQQTREYE ETLIR

Arabidopsis Description

Probable polyamine transporter At1g31830 [Source:UniProtKB/Swiss-Prot;Acc:Q9C6S5]
SUBAcon: [mitochondrion,plasma membrane,golgi]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.