CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane, plastid

Predictor Summary:

plastid 3
plasma membrane 2
mitochondrion 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX70141	Canola	plasma membrane, plastid	93.25	93.63
AT5G05630.1	Thale cress	plasma membrane	78.53	78.37
VIT_02s0033g01310.t01	Wine grape	plasma membrane	68.51	69.65
Solyc08g078100.1.1	Tomato	plasma membrane	65.85	68.8
PGSC0003DMT400067464	Potato	plasma membrane	65.64	68.59
CDY63076	Canola	endoplasmic reticulum, plasma membrane, vacuole	52.35	68.27
PGSC0003DMT400047497	Potato	plasma membrane	65.24	68.02
VIT_02s0033g01320.t01	Wine grape	plasma membrane	65.24	67.44
KRH07711	Soybean	plasma membrane	64.83	67.02
KRH76400	Soybean	plasma membrane	65.44	65.84
CDY12285	Canola	golgi, peroxisome, plasma membrane, plastid	66.87	65.66
GSMUA_Achr1P27820_001	Banana	plasma membrane	57.26	64.81
GSMUA_Achr4P11590_001	Banana	plasma membrane	40.49	63.26
CDY12286	Canola	plasma membrane	50.51	63.17
GSMUA_Achr9P23200_001	Banana	plasma membrane	39.67	62.38
KRH39685	Soybean	cytosol, peroxisome, plasma membrane, plastid	65.03	61.63
TraesCS6D01G245700.1	Wheat	plasma membrane	62.37	61.24
Zm00001d024516_P001	Maize	plasma membrane	61.55	61.05
EES13409	Sorghum	plasma membrane	61.35	60.85
Solyc08g005540.1.1	Tomato	cytosol, peroxisome, plasma membrane	65.85	60.75
TraesCS5B01G019600.1	Wheat	mitochondrion, plasma membrane	61.15	60.4
TraesCS5A01G022700.1	Wheat	mitochondrion, plasma membrane	61.15	60.4
TraesCS5D01G028100.1	Wheat	plasma membrane	60.94	60.2
Solyc08g075710.2.1	Tomato	plastid	65.64	60.11
HORVU5Hr1G006170.3	Barley	golgi, plasma membrane	61.15	59.33
Zm00001d017728_P001	Maize	plasma membrane	62.58	58.29
TraesCS6A01G269200.2	Wheat	plasma membrane	62.58	57.95
OQU85562	Sorghum	peroxisome, plasma membrane, vacuole	63.39	57.62
TraesCS6B01G296500.2	Wheat	plasma membrane	61.76	56.87
Os02t0700500-01	Rice	cytosol, peroxisome, plasma membrane	61.55	56.69
Os03t0576900-01	Rice	plastid	60.53	53.82
CDY42190	Canola	golgi, plasma membrane, vacuole	52.35	53.56
CDY69762	Canola	golgi, plasma membrane, vacuole	51.74	52.93
CDY46166	Canola	plasma membrane	51.74	52.82
HORVU6Hr1G068230.1	Barley	plastid	61.76	52.52
CDX99215	Canola	plasma membrane	51.33	52.07
CDX75722	Canola	plasma membrane	26.18	47.41
CDY23626	Canola	plasma membrane	42.33	43.58
CDX97502	Canola	plasma membrane	42.33	43.4
CDX75721	Canola	plasma membrane	41.92	42.98
CDX82530	Canola	plasma membrane	41.72	42.77

Protein Annotations

Gene3D:1.20.1740.10	MapMan:24.2.3.5.1	GO:A0A078ECS1	InterPro:AA/rel_permease1	EnsemblPlants:CDX98852	ProteinID:CDX98852
ProteinID:CDX98852.1	GO:GO:0003674	GO:GO:0005215	GO:GO:0005575	GO:GO:0006810	GO:GO:0008150
GO:GO:0016020	GO:GO:0022857	GO:GO:0055085	EnsemblPlantsGene:GSBRNA2T00106953001	PFAM:PF13520	PIRSF:PIRSF006060
PANTHER:PTHR11785	PANTHER:PTHR11785:SF338	TMHMM:TMhelix	UniParc:UPI0004EF46F2	SEG:seg	:

Description

BnaC09g49830D

Coordinates

chrLK031907:+:276140..277609

Molecular Weight (calculated)

52952.4 Da

IEP (calculated)

8.540

GRAVY (calculated)

0.608

Length

489 amino acids

Sequence
(BLAST)

001: MTDLSSSSLR SEAQKPTGNS PPPPPTDPGH VTISLTPPSP TPPSAAANTT RKISLLPLIF LIFYEVSGGP FGIEDTVKAA GPLLAILGLI LFPFVWSIPE
101: ALITAEMSTM FPENGGYVVW VSSALGPYWG FQQGWVKWLS GVIDNALYPI LFLDYLQSGL PVISRGLPRV ASVIALTFAL TYLSYRGLSI VGVAAVVIGV
201: FSILPFVVMC LVSIPKVEPL RWLVVSQRKG VDFSLYLNTL FWNLNYWDSI STLSGEVGEP SKTLPKALFY ALLLVVLSYI FPVLSGTGAL PLDQERWTDG
301: YFAEIGKVIG GGWLGWWIRA AAAASNMGMF LAEMSSDSFQ LLGMAERGML PEVFARRSRY GTPWVGILFS ASGVVVLSWL SFQEIVAAEN LLYCFGMVLE
401: FIAFVRLRVK HPAASRPFKI PVGVLGSVIM CVPPTVLIGF IAAFSDLKVA GVSLAAVVFG LVLQPCLKKV EKKGWVKFSV SSHLPDLMA

Best Arabidopsis Sequence Match ( AT5G05630.1 )
(BLAST)

001: MTELSSPNLD SASQKPRIST ENPPPPPPHI SIGVTTGDPA TSPARTVNQI KKITVLPLVF LIFYEVSGGP FGIEDSVKAA GPLLAIVGFI VFPFIWSIPE
101: ALITAEMGTM FPENGGYVVW VTLAMGPYWG FQQGWVKWLS GVIDNALYPI LFLDYLKSGI PILGSGIPRV AAILVLTVAL TYLNYRGLSI VGVAAVLLGV
201: FSILPFVVMS FMSIPKLKPS RWLVVSKKMK GVNWSLYLNT LFWNLNYWDS VSTLTGEVEN PSKTLPRALF YALLLVVFSY IFPVLTGTGA IALDQKLWTD
301: GYFADIGKVI GGVWLGWWIQ AAAATSNMGM FLAEMSSDSF QLLGMAERGM LPEVFAKRSR YRTPWVGILF SASGVIILSW LSFQEIVAAE NLLYCFGMVL
401: EFITFVRLRM KYPAASRPFK IPVGVLGSVL MCIPPTVLIG VIMAFTNLKV ALVSLAAIVI GLVLQPCLKQ VEKKGWLKFS TSSHLPNLME

Arabidopsis Description

RMV1Polyamine transporter RMV1 [Source:UniProtKB/Swiss-Prot;Acc:Q9FFL1]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.