Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion, plasma membrane, golgi
Predictor Summary:
Predictor Summary:
- nucleus 1
- golgi 1
- mitochondrion 2
- plasma membrane 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY12285 | Canola | golgi, peroxisome, plasma membrane, plastid | 91.52 | 90.96 |
| Bra023210.1-P | Field mustard | golgi, peroxisome, plasma membrane, plastid | 91.31 | 90.76 |
| AT1G31820.1 | Thale cress | plasma membrane | 74.75 | 76.76 |
| Solyc08g078100.1.1 | Tomato | plasma membrane | 71.11 | 75.21 |
| PGSC0003DMT400067464 | Potato | plasma membrane | 70.71 | 74.79 |
| VIT_02s0033g01310.t01 | Wine grape | plasma membrane | 72.12 | 74.22 |
| KRH76400 | Soybean | plasma membrane | 71.72 | 73.05 |
| PGSC0003DMT400047497 | Potato | plasma membrane | 68.89 | 72.71 |
| GSMUA_Achr4P11590_001 | Banana | plasma membrane | 45.66 | 72.2 |
| KRH07711 | Soybean | plasma membrane | 68.48 | 71.67 |
| VIT_02s0033g01320.t01 | Wine grape | plasma membrane | 68.28 | 71.46 |
| GSMUA_Achr1P27820_001 | Banana | plasma membrane | 60.81 | 69.68 |
| KRH39685 | Soybean | cytosol, peroxisome, plasma membrane, plastid | 72.32 | 69.38 |
| GSMUA_Achr9P23200_001 | Banana | plasma membrane | 43.43 | 69.13 |
| TraesCS5A01G022700.1 | Wheat | mitochondrion, plasma membrane | 68.48 | 68.48 |
| Zm00001d024516_P001 | Maize | plasma membrane | 67.47 | 67.75 |
| EES13409 | Sorghum | plasma membrane | 67.47 | 67.75 |
| TraesCS5B01G019600.1 | Wheat | mitochondrion, plasma membrane | 67.68 | 67.68 |
| TraesCS5D01G028100.1 | Wheat | plasma membrane | 67.68 | 67.68 |
| AT5G05630.1 | Thale cress | plasma membrane | 66.87 | 67.55 |
| HORVU5Hr1G006170.3 | Barley | golgi, plasma membrane | 68.28 | 67.06 |
| Solyc08g005540.1.1 | Tomato | cytosol, peroxisome, plasma membrane | 70.1 | 65.47 |
| TraesCS6D01G245700.1 | Wheat | plasma membrane | 64.85 | 64.46 |
| Solyc08g075710.2.1 | Tomato | plastid | 69.29 | 64.23 |
| Zm00001d017728_P001 | Maize | plasma membrane | 66.06 | 62.29 |
| OQU85562 | Sorghum | peroxisome, plasma membrane, vacuole | 66.67 | 61.34 |
| Os03t0576900-01 | Rice | plastid | 68.08 | 61.27 |
| Os02t0700500-01 | Rice | cytosol, peroxisome, plasma membrane | 65.45 | 61.02 |
| TraesCS6A01G269200.2 | Wheat | plasma membrane | 64.65 | 60.61 |
| TraesCS6B01G296500.2 | Wheat | plasma membrane | 63.84 | 59.51 |
| HORVU6Hr1G068230.1 | Barley | plastid | 64.44 | 55.48 |
| AT3G19553.1 | Thale cress | plasma membrane | 53.13 | 54.91 |
| AT3G13620.1 | Thale cress | plasma membrane | 40.2 | 41.63 |
Protein Annotations
| Gene3D:1.20.1740.10 | MapMan:24.2.3.5.1 | EntrezGene:840073 | InterPro:AA/rel_permease1 | ProteinID:AAG50709.1 | ProteinID:AEE31400.1 |
| ProteinID:AEE31401.1 | EMBL:AK317082 | ArrayExpress:AT1G31830 | EnsemblPlantsGene:AT1G31830 | RefSeq:AT1G31830 | TAIR:AT1G31830 |
| RefSeq:AT1G31830-TAIR-G | EnsemblPlants:AT1G31830.1 | TAIR:AT1G31830.1 | Unigene:At.25026 | EMBL:BT030375 | GO:GO:0003333 |
| GO:GO:0003674 | GO:GO:0005215 | GO:GO:0005575 | GO:GO:0005623 | GO:GO:0005886 | GO:GO:0005887 |
| GO:GO:0006810 | GO:GO:0008150 | GO:GO:0015171 | GO:GO:0015179 | GO:GO:0015203 | GO:GO:0015293 |
| GO:GO:0015297 | GO:GO:0015846 | GO:GO:0016020 | GO:GO:0016021 | GO:GO:0022857 | GO:GO:0055085 |
| GO:GO:1902047 | GO:GO:1902475 | RefSeq:NP_174466.1 | RefSeq:NP_973947.1 | PFAM:PF13520 | PIRSF:PIRSF006060 |
| PO:PO:0000013 | PO:PO:0000037 | PO:PO:0000084 | PO:PO:0000230 | PO:PO:0000293 | PO:PO:0001016 |
| PO:PO:0001017 | PO:PO:0001054 | PO:PO:0001078 | PO:PO:0001081 | PO:PO:0001185 | PO:PO:0004507 |
| PO:PO:0007064 | PO:PO:0007095 | PO:PO:0007098 | PO:PO:0007103 | PO:PO:0007115 | PO:PO:0007123 |
| PO:PO:0007611 | PO:PO:0007616 | PO:PO:0008019 | PO:PO:0009005 | PO:PO:0009006 | PO:PO:0009009 |
| PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009029 | PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 |
| PO:PO:0009046 | PO:PO:0009047 | PO:PO:0009052 | PO:PO:0020030 | PO:PO:0020038 | PO:PO:0020100 |
| PO:PO:0020137 | PO:PO:0025022 | PO:PO:0025195 | PO:PO:0025281 | PANTHER:PTHR11785 | PANTHER:PTHR11785:SF338 |
| UniProt:Q9C6S5 | TMHMM:TMhelix | UniParc:UPI0000048314 | SEG:seg | : | : |
Description
Probable polyamine transporter At1g31830 [Source:UniProtKB/Swiss-Prot;Acc:Q9C6S5]
Coordinates
chr1:-:11418589..11420961
Molecular Weight (calculated)
54830.7 Da
IEP (calculated)
6.157
GRAVY (calculated)
0.495
Length
495 amino acids
Sequence
(BLAST)
(BLAST)
001: MQKRRIITVN PSASIEMSQY ENNEVPYSSV GADEVPSSPP KATDKIRKVS MLPLVFLIFY EVSGGPFGVE DSVNAAGPLL ALLGFVIFPF IWSIPEALIT
101: AEMGTMYPEN GGYVVWVSSA LGPFWGFQQG WMKWLSGVID NALYPVLFLD YLKSGVPALG SGLPRVASIL VLTILLTYLN YRGLTIVGWV AVLMGVFSIL
201: PFAVMGLISI PQLEPSRWLV MDLGNVNWNL YLNTLFWNLN YWDSISTLAG EVENPNHTLP KALFYGVILV ACSYIFPLLA GIGAIPLERE KWTDGYFSDV
301: AKALGGAWLR WWVQAAAATS NMGMFIAEMS SDSFQLLGMA ERGMLPEFFA KRSRYGTPLL GILFSASGVV LLSWLSFQEI VAAENLLYCV GMILEFIAFV
401: RMRMKHPAAS RPYKIPIGTT GSILMCIPPT ILICAVVALS SLKVAAVSIV MMIIGFLIHP LLNHMDRKRW VKFSISSDLP DLQQQTREYE ETLIR
101: AEMGTMYPEN GGYVVWVSSA LGPFWGFQQG WMKWLSGVID NALYPVLFLD YLKSGVPALG SGLPRVASIL VLTILLTYLN YRGLTIVGWV AVLMGVFSIL
201: PFAVMGLISI PQLEPSRWLV MDLGNVNWNL YLNTLFWNLN YWDSISTLAG EVENPNHTLP KALFYGVILV ACSYIFPLLA GIGAIPLERE KWTDGYFSDV
301: AKALGGAWLR WWVQAAAATS NMGMFIAEMS SDSFQLLGMA ERGMLPEFFA KRSRYGTPLL GILFSASGVV LLSWLSFQEI VAAENLLYCV GMILEFIAFV
401: RMRMKHPAAS RPYKIPIGTT GSILMCIPPT ILICAVVALS SLKVAAVSIV MMIIGFLIHP LLNHMDRKRW VKFSISSDLP DLQQQTREYE ETLIR
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.