Factsheet for GSMUA_Achr4P28240_001

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

nucleus 1
cytosol 1
plasma membrane 4
plastid 1
extracellular 1
endoplasmic reticulum 1
vacuole 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	cytosol, nucleus, plastid, secretory
BaCelLo:	nucleus
EpiLoc:	cytosol
MultiLoc:	plasma membrane
Plant-mPloc:	plastid
PProwler:	secretory
WoLF PSORT:	plasma membrane
YLoc:	plasma membrane

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr2P13450_001	Banana	plasma membrane	65.45	72.7
Bra038217.1-P	Field mustard	golgi, plasma membrane, vacuole	63.26	54.39
CDY42190	Canola	golgi, plasma membrane, vacuole	63.26	54.39
CDY69762	Canola	golgi, plasma membrane, vacuole	62.77	53.97
VIT_03s0091g00600.t01	Wine grape	plasma membrane	65.94	53.77
Bra022433.1-P	Field mustard	plasma membrane	62.53	53.65
AT3G19553.1	Thale cress	plasma membrane	62.53	53.65
CDY46166	Canola	plasma membrane	62.29	53.44
KRH77938	Soybean	plasma membrane	62.77	53.42
CDX99215	Canola	plasma membrane	61.8	52.7
PGSC0003DMT400013939	Potato	plasma membrane	63.02	52.22
Solyc10g049640.1.1	Tomato	plasma membrane	61.07	51.22
Zm00001d030832_P001	Maize	plasma membrane	56.45	46.68
EES16229	Sorghum	plasma membrane	55.23	46.23
TraesCS5D01G085800.1	Wheat	golgi, plasma membrane, vacuole	54.26	46.07
GSMUA_Achr9P23200_001	Banana	plasma membrane	34.79	45.98
GSMUA_Achr4P11590_001	Banana	plasma membrane	34.79	45.69
TraesCS5B01G079100.1	Wheat	golgi, plasma membrane, vacuole	53.77	45.57
TraesCS5A01G073000.1	Wheat	golgi, plasma membrane, vacuole	53.53	45.36
Os12t0580400-01	Rice	plasma membrane	54.5	45.16
GSMUA_Achr1P27820_001	Banana	plasma membrane	42.58	40.51
HORVU5Hr1G019110.1	Barley	plastid	53.77	39.89
GSMUA_AchrUn_...	Banana	cytosol, peroxisome, plasma membrane	32.85	29.09

Protein Annotations

Gene3D:1.20.1740.10	MapMan:24.2.3.5.1	InterPro:AA/rel_permease1	GO:GO:0003333	GO:GO:0003674	GO:GO:0005215
GO:GO:0005575	GO:GO:0006810	GO:GO:0008150	GO:GO:0015171	GO:GO:0016020	GO:GO:0016021
GO:GO:0022857	GO:GO:0055085	EnsemblPlantsGene:GSMUA_Achr4G28240_001	EnsemblPlants:GSMUA_Achr4P28240_001	EnsemblPlants:GSMUA_Achr4T28240_001	UniProt:M0SST6
PFAM:PF13520	PANTHER:PTHR11785	PANTHER:PTHR11785:SF338	TMHMM:TMhelix	UniParc:UPI000295D79D	SEG:seg

Description

Whole genome shotgun sequence of line PN40024, scaffold_91.assembly12x (Fragment) [Source:GMGC_GENE;Acc:GSMUA_Achr4G28240_001]

Coordinates

chr4:+:26720582..26724766

Molecular Weight (calculated)

44561.9 Da

IEP (calculated)

4.238

GRAVY (calculated)

0.388

Length

411 amino acids

Sequence
(BLAST)

001: MGEASGDDDS SYPFSVTTPQ PPPPPPPKKL SVLPLIALIF YNVSGGPFGV EDSVSAGGGP LLSLLGFLVF PFLWSLPEAL VTAELAASFP ENGGYVLWIS
101: SAFGPFWGFQ EGFWKWASGT MDNALYPVLF LDYLCQSLPF FARPAARTPA LLVLTAGLTF LNYRGLNIAS TLAGEVEDPS RSFPKALFGA VILVMASYLI
201: PLLAGTGAMD ASITEEWKDG YFAQVGMVIG GAWLRWWIQA AAAMSNMGLF EAEMSSDSFQ LLGMSEMGML PAIFAERSKY GTPTISILCS ATGVILLSWM
301: SFQEIVEFLN FLYSLGMLLE TFIVSGSVML GGFLLYPAIE HMRNKNCIKF LNTTLPPEGC SNTPQVQNQD VVDEASVSFL PDHSCWRQAC VDWFACGNAF
401: FVRAVGRATS R

Best Arabidopsis Sequence Match ( AT3G19553.1 )
(BLAST)

001: MGEEETIVND ENSSKPKPSP KLTLLPLVFL IFYEVSGGPF GVEDSVKSGG GPLLALLGFL IFPLIWSIPE ALVTAELATS FPENGGYVVW ISSAFGPFWG
101: FQEGFWKWFS GVMDNALYPV LFLDYLKHSF PVLDHVAARV PALLVITFSL TYLNYRGLHI VGFSAVVLAV FSLCPFVVMA LLAVPNIRPK RWLFVDTQKI
201: NWRGYFNTMF WNLNYWDKAS TLAGEVDRPG KTFPKALFGA VLLVMGSYLI PLMAGTGALS SSTSGEWSDG YFAEVGMLIG GVWLKGWIQA AAAMSNLGLF
301: EAEMSSDAFQ LLGMSEIGML PAFFAQRSKY GTPTISILCS ATGVIFLSWM SFQEIIEFLN FLYALGMLLE FAAFVKLRIK KPDLHRPYRV PLNTFGVSML
401: CLPPSLLVIL VMVLAAPKTF LISGVIIVLG FCLYPFLTLV KEKQWARFIP EETRPVSGVS SESQLDEEHG DESAASLLP

Arabidopsis Description

PUT5 [Source:UniProtKB/TrEMBL;Acc:A0A178VGC5]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.