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Canola
Subcellular Localization
min:
: max

 
Winner_takes_all: nucleus

Predictor Summary:
  • nucleus 4
  • mitochondrion 1
PPI

Inferred distinct locusB in Crop

locusBlocations
CDX89318
CDX94304
CDX97358

Inferred from Arabidopsis experimental PPI

Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Bra040518.1-P Field mustard nucleus 96.85 98.97
CDY49055 Canola nucleus 80.5 82.5
CDY37520 Canola nucleus 80.27 82.03
AT3G01460.1 Thale cress nucleus 80.73 81.25
VIT_13s0047g00420.t01 Wine grape cytosol 2.79 63.54
HORVU5Hr1G123360.1 Barley cytosol, nucleus 3.01 55.46
VIT_13s0101g00020.t01 Wine grape cytosol 2.83 50.82
KRG93338 Soybean nucleus 42.42 42.71
VIT_14s0066g01450.t01 Wine grape nucleus 40.78 42.63
KRH20317 Soybean nucleus 42.74 42.51
HORVU5Hr1G123350.3 Barley cytosol 14.66 36.19
TraesCS5D01G556000.1 Wheat cytosol, extracellular, nucleus 2.74 36.14
TraesCS3A01G530300.1 Wheat cytosol, extracellular, mitochondrion, nucleus 2.74 35.93
TraesCS4A01G324900.1 Wheat cytosol, mitochondrion, nucleus, vacuole 25.34 33.95
GSMUA_Achr3P12190_001 Banana nucleus 32.1 33.72
EES04674 Sorghum nucleus 31.32 32.45
TraesCS6A01G169600.1 Wheat nucleus 30.64 32.07
TraesCS6D01G159400.1 Wheat nucleus 30.5 31.95
Solyc05g005640.2.1 Tomato nucleus 29.18 31.92
TraesCS6B01G197500.1 Wheat nucleus 30.41 31.9
HORVU6Hr1G034680.3 Barley nucleus 30.37 31.76
Os02t0192400-01 Rice nucleus 13.56 31.43
Zm00001d053697_P007 Maize nucleus 30.59 31.21
TraesCS4A01G325100.1 Wheat plastid 3.88 29.82
TraesCS5B01G537600.1 Wheat mitochondrion, plastid 3.93 28.86
TraesCS5B01G570700.1 Wheat mitochondrion 3.74 27.33
HORVU5Hr1G123390.2 Barley nucleus 18.17 25.89
TraesCS5D01G556100.1 Wheat nucleus 3.29 25.53
CDX68064 Canola nucleus 3.52 16.67
CDX98073 Canola cytosol 2.05 15.68
CDX79193 Canola endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, vacuole 3.42 15.06
CDX88353 Canola nucleus 3.06 13.9
CDX87531 Canola nucleus 3.11 13.74
Protein Annotations
Gene3D:1.20.920.10Gene3D:3.30.160.360Gene3D:3.30.40.10MapMan:35.1GO:A0A078GU19UniProt:A0A078GU19
InterPro:Bromodomain-like_sfEnsemblPlants:CDY28674ProteinID:CDY28674ProteinID:CDY28674.1ncoils:CoilInterPro:DNA-bd_dom_sf
InterPro:FYrich_CInterPro:FYrich_NGO:GO:0003674GO:GO:0003676GO:GO:0003677GO:GO:0005488
GO:GO:0005515GO:GO:0005575GO:GO:0005622GO:GO:0005623GO:GO:0005634GO:GO:0046872
EnsemblPlantsGene:GSBRNA2T00041301001InterPro:IPR001739InterPro:IPR003888InterPro:IPR003889InterPro:IPR013083InterPro:IPR019787
InterPro:IPR036427InterPro:Methyl_CpG_DNA-bdPFAM:PF00628PFAM:PF01429PFAM:PF05964PFAM:PF15612
PFAM:PF15613ScanProsite:PS01359PFscan:PS50016PFscan:PS50982PFscan:PS51542PFscan:PS51543
PANTHER:PTHR14140PANTHER:PTHR14140:SF29SMART:SM00249SUPFAM:SSF54171SUPFAM:SSF57903UniParc:UPI0004EE9C87
InterPro:WHIM1_domInterPro:WHIM2_domInterPro:Zinc_finger_PHD-type_CSInterPro:Znf_FYVE_PHDInterPro:Znf_PHDInterPro:Znf_PHD-finger
InterPro:Znf_RING/FYVE/PHDSEG:seg::::
Description
BnaCnng05600DBnaCnng05600D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GU19]
Coordinates
chrLK032225:-:177849..186651
Molecular Weight (calculated)
242696.0 Da
IEP (calculated)
5.335
GRAVY (calculated)
-0.435
Length
2190 amino acids
Sequence
(BLAST)
0001: MELTDSTKKQ LGETRSAALD EDNRSFLGID LNEIPTGATP GGAVQDDDGE YEPVEVVRSI HDNPDPAPGA PAEVPEPDRD AACGACGRPE SMELVVVCDA
0101: CERGFHLSCV DDGVEAAPSA DWMCSDCVAG GGRSKLWPLG VKSKLILDMN ASPPSDAEGY GGEDTSDSRK HMLAMGNSFE HSMTHSSFLD PGRAHTLGFG
0201: FPSNLGNSTL PIRFPSLDPS ELLLQNLRHF ISERHGVLED GWHVEFKQPL NGYHLCPVYC SPSGKTFSSI QDVACYLGLA TNGNYSCMDT DIRNESSLLQ
0301: ERLNMPKRRK TSRWPNNSFP DLKGSSVSAQ LSRFPYNGQT MPPFAISSGE SLSSGNNGCG CEEANKGLPM QFEDFFVLSL GRIDIRQSYH NVNMIYPIGY
0401: KSCWHDKITG SLFTCEVSGG SSGPVFKITR SPCSKSFVPV GSTVFSCPKI DEMVEQNIDK RGDRRDSIQE HDDDTVEILL SDPSPPLGDD ILSCLQEKSF
0501: SSTFYCLRSE VGSSQVDLNN TLSYNQQHEV EIGDIIVEED SLSVAWQKVS QKLVDACSNV LKHKGTMNFR CKHVDRETRE INWDTRNEKD NVILSLSRFC
0601: CSLAPHSATC GGKDNSEIAS LVDVLSRWLD QSRFGLDADF VQEMIERMPG AESCSNYRSL KTRSSSVSVT VAEGALIANP KVGENVREEV FGEISRKAKR
0701: HKLNGGHGFS NPHPPPGRPM CLRLPPVVVG DFLQVSEVFW RFREILGLGE AFSPEKLEQE IVNPVFDGLF LDKSGKEVNR SEMNISDEDR TATKFLSLLD
0801: ESRQPFSSEN TFASVLKETK AGDSTEFNIS NSSRGPCVGA LLTKTHISLL QVLICELQSK VAAFVDPNFD SGESRSRRGR KKDDSTLSAK RNKLHMLPVN
0901: EFTWPELARR YILSLLSMDG NLESAEIAAR ESGKVFRCLQ GDGGLLCGSL TGVDGMEADS MLLAEAIKKI FGSLTRENDV LSVEDDDSDG LDATETNACN
1001: GDIPEWALVL EPVRKLPTNV GTRIRKCVYD ALERNPPEWA KKILEHSISK EVYKGNASGP TKKAVLSLLA DVRGGDLVQK SVKGTKKRTS IGVSDVIMKK
1101: CRAVLRDVAA VDEDKVFCTL LGRKLLNLND NDDDGLLGSP AMVSRPLDFR TIDLRLAVGA YDGSTEAFLE DILELWSCIR VMYADQPDSL ELVEKLSKKF
1201: KSLYEAELGS LLKSNGRDSL IKQILLRLIV CESYRSLRSE LDAFEGFFLL CACRIIVVLA FQFPGVVLPL AQKLMDYRKL ECLSAEMRKE IKDIVVSVNK
1301: LPKAPWDEGV CKICGVDKDD DSVLLCDTCD AEYHTYCLNP PLIRIPDGNW YCPSCVIAKR MAQDALESNK LVRRRKRRKY QGELTRASME TAARLVDVMG
1401: EKDYWEFSAE ERILVLKLLC DELLSSSLVH QHLEQCAEAL IEMQQKLRSL SSEWKNTKLR QEFLTAKLAK VEPSILKEMG EPQNSSSFAD HHGRHQQQEN
1501: VGEKVPHDDG TSSAAFLTNN QGKAPIETHA QTGGSNVISS ENKIHTPEKV TSPGRNELPI EVTDHMSCEI EDTTETLDKS VGKNRETHSI KPNAAELKTA
1601: HDASSLASQE LQACRQDLNA TSNEIQNLQQ SIRSIESQIL RQSIRRDFLG SDGSGRLYWG CYFAEEHPRI LVDGSMSLQK AVQVDLTGSK VPSPFLHAVD
1701: HGRLMVSPWT YYETEAEISE LVLWLHDDDP KERELRESIM CWKRIRFGDL QREIKQAENS SSPIMAGDLV TKAAMAMEKR YGPCIKLEIE TYKKRGKKTK
1801: CAEREKLCRC ECLESILPSM IHCLICHKTF ASDDEFEEHA ESKCVPYSLA TEEGKEKSDS SKAKESLKSD YLSVKSSAGK DKAEISNVSE LGSGLIRYQE
1901: EESISPYHFE EICSKFVTKD SNRDLVKEIG LIGSNGSPTF LPLPSIHLND PMLISATCNK LDGGDSGDQV IFTGSEANGE GLNSESLDRS VTNDLGNPLN
2001: KLSGMGCDKS EEKNKKSTGS GLKGCCVVPQ ASLKRVTGKA LPVFRFLKTN LLDMDVALPE EALRPSKSHP DRRRAWRAFV KSAQSIFELV QAAIVVEDMI
2101: KTEYLKNEWW YWSSLSAAAK ISTLSALSLH IFSLDAAIMY DKTITQSDPM DATKEIGLQE QKSQPVTDPQ ERSSRANRRS GKKRKEPEGA
Best Arabidopsis Sequence Match ( AT3G01460.1 )
(BLAST)
0001: MEPTDSTNEQ LGDTKTAAVK EESRSFLGID LNEIPTGATL GGGCTAGQDD DGEYEPVEVV RSIHDNPDPA PGAPAEVPEP DRDASCGACG RPESIELVVV
0101: CDACERGFHM SCVNDGVEAA PSADWMCSDC RTGGERSKLW PLGVKSKLIL DMNASPPSDA EGYGAEETSD SRKHMLASSS CIGNSFDYAM MHSSFSSLGR
0201: GHASLEASGL MSRNTKMSMD ALGSHNLGFG FPLNLNNSSL PMRFPSLDPS ELFLQNLRHF ISERHGVLED GWRVEFRQPL NGYQLCAVYC APNGKTFSSI
0301: QEVACYLGLA INGNYSCMDA EIRNENSLLQ ERLHTPKRRK TSRWPNNGFP EQKGSSVSAQ LRRFPFNGQT MSPFAVKSGT HFQAGGSLSS GNNGCGCEEA
0401: KNGCPMQFED FFVLSLGRID IRQSYHNVNV IYPIGYKSCW HDKITGSLFT CEVSDGNSGP IFKVTRSPCS KSFIPAGSTV FSCPKIDEMV EQNSDKLSNR
0501: RDSTQERDDD ASVEILLSEH CPPLGDDILS CLREKSFSKT VNSLRSEVDS SRVDFDKNLS YDQDHGVEIG DIVVEEDSLS DAWKKVSQKL VDACSIVLKQ
0601: KGTLNFLCKH VDRETSEINW DTMNEKDNVI LSLSKFCCSL APCSVTCGEK DKSEFAAVVD ALSRWLDQNR FGLDADFVQE MIEHMPGAES CTNYRTLKSR
0701: SSSSVPITVA EGALVVKPKG GENVKDEVFG EISRKAKKPK LNGGHGVRNL HPPPGRPMCL RLPPGLVGDF LQVSEVFWRF HEILGFEEAF SPENLEQELI
0801: NPVFDGLFLD KPGKDDKRSE INFTDKDSTA TKLFSLFDES RQPFPAKNTS ASELKEKKAG DSSDFKISDS SRGSCVGALL TRAHISLLQV LICELQSKVA
0901: AFVDPNFDSG ESRSRRGRKK DDSTLSAKRN KLHMLPVNEF TWPELARRYI LSLLSMDGNL ESAEIAARES GKVFRCLQGD GGLLCGSLTG VAGMEADSML
1001: LAEAIKKISG SLTSENDVLS VEDDDSDGLD ATETNTCSGD IPEWAQVLEP VKKLPTNVGT RIRKCVYEAL ERNPPEWAKK ILEHSISKEI YKGNASGPTK
1101: KAVLSLLADI RGGDLVQRSI KGTKKRTYIS VSDVIMKKCR AVLRGVAAAD EDKVLCTLLG RKLLNSSDND DDGLLGSPAM VSRPLDFRTI DLRLAAGAYD
1201: GSTEAFLEDV LELWSSIRVM YADQPDCVDL VATLSEKFKS LYEAEVVPLV QKLKDYRKLE CLSAEMKKEI KDIVVSVNKL PKAPWDEGVC KVCGVDKDDD
1301: SVLLCDTCDA EYHTYCLNPP LIRIPDGNWY CPSCVIAKRM AQEALESYKL VRRRKGRKYQ GELTRASMEL TAHLADVMEE KDYWEFSAEE RILLLKLLCD
1401: ELLSSSLVHQ HLEQCAEAII EMQQKLRSLS SEWKNAKMRQ EFLTAKLAKV EPSILKEVGE PHNSSYFADQ MGCDPQPQEG VGDGVTRDDE TSSTAYLNKN
1501: QGKSPLETDT QPGESHVNFG ESKISSPETI SSPGRHELPI ADTSPLVTDN LPEKDTSETL LKSVGRNHET HSPNSNAVEL PTAHDASSQA SQELQACQQD
1601: LSATSNEIQN LQQSIRSIES QLLKQSIRRD FLGTDASGRL YWGCCFPDEN PRILVDGSIS LQKPVQADLI GSKVPSPFLH TVDHGRLRLS PWTYYETETE
1701: ISELVQWLHD DDLKERDLRE SILWWKRLRY GDVQKEKKQA QNLSAPVFAT GLETKAAMSM EKRYGPCIKL EMETLKKRGK KTKVAEREKL CRCECLESIL
1801: PSMIHCLICH KTFASDDEFE DHTESKCIPY SLATEEGKDI SDSSKAKESL KSDYLNVKSS AGKDVAEISN VSELDSGLIR YQEEESISPY HFEEICSKFV
1901: TKDCNRDLVK EIGLISSNGI PTFLPSSSTH LNDSVLISAK SNKPDGGDSG DQVIFAGPET NVEGLNSESN MSFDRSVTDS HGGPLDKPSG LGFGFSEQKN
2001: KKSSGSGLKS CCVVPQAALK RVTGKALPGF RFLKTNLLDM DVALPEEALR PSKSHPNRRR AWRVFVKSSQ SIYELVQATI VVEDMIKTEY LKNEWWYWSS
2101: LSAAAKISTL SALSVRIFSL DAAIIYDKPI TPSNPIDETK PIISLPDQKS QPVSDSQERS SRVRRSGKKR KEPEGS
Arabidopsis Description
MBD9MBD9 [Source:UniProtKB/TrEMBL;Acc:A0A178VJY9]
SUBAcon: [nucleus]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.