CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytoskeleton, vacuole, cytosol

Predictor Summary:

extracellular 2
endoplasmic reticulum 1
vacuole 3
plasma membrane 2
golgi 1
cytosol 1
nucleus 1
mitochondrion 1
cytoskeleton 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytoskeleton, cytosol, vacuole
Any Predictor:	cytoskeleton, cytosol, mitochondrion, nucleus, secretory
BaCelLo:	secretory
EpiLoc:	vacuole
MultiLoc:	cytosol
Plant-mPloc:	extracellular, nucleus, plasma membrane
PProwler:	mitochondrion
WoLF PSORT:	cytoskeleton
YLoc:	vacuole

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX90411	Canola	cytoskeleton, cytosol, vacuole	100.0	100.0
Bra020158.1-P	Field mustard	cytosol, extracellular, nucleus	100.0	88.75
CDY14333	Canola	endoplasmic reticulum	100.0	16.63
CDY60579	Canola	endoplasmic reticulum	100.0	16.55
AT5G54140.1	Thale cress	endoplasmic reticulum	88.73	14.72
VIT_16s0098g00770.t01	Wine grape	cytosol	64.79	14.33
CDY42210	Canola	mitochondrion	33.8	14.04
GSMUA_Achr5P10200_001	Banana	cytosol	54.93	12.23
CDY12538	Canola	cytosol, endoplasmic reticulum	49.3	11.95
VIT_16s0098g00780.t01	Wine grape	mitochondrion	61.97	11.17
PGSC0003DMT400069509	Potato	endoplasmic reticulum	61.97	10.23
Solyc06g073060.2.1	Tomato	endoplasmic reticulum	61.97	10.23
TraesCS2A01G379500.1	Wheat	endoplasmic reticulum	59.15	10.1
TraesCS2A01G379400.1	Wheat	endoplasmic reticulum	61.97	10.07
OQU81996	Sorghum	endoplasmic reticulum, extracellular	59.15	10.05
TraesCS2B01G396300.1	Wheat	endoplasmic reticulum	61.97	10.05
HORVU2Hr1G090000.1	Barley	endoplasmic reticulum, golgi, mitochondrion	63.38	10.02
TraesCS2B01G396400.1	Wheat	endoplasmic reticulum	59.15	9.98
Os04t0521800-01	Rice	endoplasmic reticulum	59.15	9.86
TraesCS2D01G375700.1	Wheat	endoplasmic reticulum	57.75	9.86
TraesCS2D01G375600.1	Wheat	endoplasmic reticulum, golgi, plastid	60.56	9.79
Zm00001d003002_P001	Maize	extracellular	59.15	9.74
HORVU2Hr1G089950.3	Barley	endoplasmic reticulum	57.75	9.53
KRH64274	Soybean	endoplasmic reticulum, golgi, mitochondrion, plastid	56.34	8.53
CDY14979	Canola	endoplasmic reticulum	49.3	7.59
CDY28718	Canola	endoplasmic reticulum	40.85	6.65
CDY51525	Canola	endoplasmic reticulum	40.85	6.59
CDY22869	Canola	endoplasmic reticulum	38.03	6.11
CDY43926	Canola	endoplasmic reticulum	36.62	5.86
CDX87841	Canola	endoplasmic reticulum	36.62	5.86
CDY32768	Canola	endoplasmic reticulum	33.8	5.41
CDY11910	Canola	endoplasmic reticulum	30.99	5.15
CDY32874	Canola	endoplasmic reticulum	32.39	5.13
CDX88581	Canola	endoplasmic reticulum	29.58	4.78
CDY69786	Canola	endoplasmic reticulum, extracellular	0.0	0.0

Protein Annotations

EnsemblPlants:CDY09109	EnsemblPlantsGene:GSBRNA2T00001328001	Gene3D:3.40.630.10	PANTHER:PTHR11014	PANTHER:PTHR11014:SF140	ProteinID:CDY09109
ProteinID:CDY09109.1	SUPFAM:SSF53187	UniParc:UPI00025456A5	UniProt:A0A078DMB6	MapMan:35.1	:

Description

BnaA02g05350DBnaA02g05350D protein [Source:UniProtKB/TrEMBL;Acc:A0A078DMB6]

Coordinates

chrLK031993:-:144620..144835

Molecular Weight (calculated)

7925.3 Da

IEP (calculated)

4.801

GRAVY (calculated)

-0.182

Length

71 amino acids

Sequence
(BLAST)

1: MAGEDFAFYQ QKIPGYYLGI GIRNEQVGSV HSVHSPYFFL DENVLPIGSA VFAALAEMYI QDHQNQTKSG Q

Best Arabidopsis Sequence Match ( AT5G54140.1 )
(BLAST)

001: MANSSIVALL LLFVIASSVN GGDQEYPNQY LTEALGDKEW LVSVRRQIHE NPELLFELHK TSALIRRELD ELGVSYSYPV AKTGIVAQIG SGYPPVVALR
101: ADMDALPLQE LVEWDHKSKI DGKMHACGHD SHTTMLLGAA KLLSKRKRML NGTVRLLFQP AEEGGAGAFH MIKEGALGDS EAIFGMHVHT GLPTGELATI
201: SGPALASTSI FSVRMSGKSP ASSETYSCVD PVLAASSTIL ALQLIISREV DPLLSHVLSV TFMKSGGSEF DVIPAYVEFG GTLRSLTTNG INWLIKRLKE
301: VVEGQAEVQR CKADIDMHED DHPMYPATVN DHKLHEFTEK VLKLLLGPEK VKPANKVMAG EDFAFYQQKI PGYYIGIGIR NEEIGSVRSV HSPYFFLDEN
401: VLPIGSATFA ALAEMYLQEH QNQTKSGD

Arabidopsis Description

ILL3IAA-amino acid hydrolase ILR1-like 3 [Source:UniProtKB/Swiss-Prot;Acc:O81641]
SUBAcon: [endoplasmic reticulum]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.