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Canola
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Canola
Subcellular Localization
min:
: max

 
Winner_takes_all: endoplasmic reticulum

Predictor Summary:
  • plastid 1
  • extracellular 4
  • golgi 4
  • plasma membrane 4
  • endoplasmic reticulum 6
  • vacuole 4
  • nucleus 1
Predictors GFP MS/MS Papers
Winner Takes All:endoplasmic reticulum
Any Predictor:nucleus, plastid, secretory
BaCelLo:plastid
iPSORT:secretory
MultiLoc:endoplasmic reticulum
Predotar:secretory
PProwler:secretory
TargetP:secretory
WoLF PSORT:nucleus
YLoc:endoplasmic reticulum
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDY43926 Canola endoplasmic reticulum 99.1 99.1
CDY69786 Canola endoplasmic reticulum, extracellular 76.58 94.97
CDY22869 Canola endoplasmic reticulum 93.24 93.67
AT1G51760.1 Thale cress endoplasmic reticulum 89.86 90.68
AT1G51780.1 Thale cress endoplasmic reticulum 81.76 83.45
VIT_09s0002g02630.t01 Wine grape endoplasmic reticulum 70.5 70.98
KRH09985 Soybean endoplasmic reticulum 68.92 68.92
KRH23345 Soybean endoplasmic reticulum 68.69 68.69
GSMUA_Achr7P24240_001 Banana endoplasmic reticulum 45.27 67.68
PGSC0003DMT400006691 Potato endoplasmic reticulum 66.67 66.52
Solyc03g121270.2.1 Tomato endoplasmic reticulum, plastid 66.22 66.07
KRH44216 Soybean extracellular 62.61 64.5
GSMUA_Achr4P15750_001 Banana endoplasmic reticulum 63.06 63.93
CDX88581 Canola endoplasmic reticulum 63.06 63.78
KRH47175 Soybean endoplasmic reticulum 62.84 63.12
TraesCS3A01G204400.1 Wheat endoplasmic reticulum 61.49 63.05
TraesCS3B01G232800.1 Wheat endoplasmic reticulum 61.71 62.99
CDY32768 Canola endoplasmic reticulum 62.84 62.84
KRH44217 Soybean endoplasmic reticulum, golgi 62.61 62.75
TraesCS3D01G207700.2 Wheat endoplasmic reticulum 62.16 62.59
CDY11910 Canola endoplasmic reticulum 59.46 61.83
KRH44214 Soybean endoplasmic reticulum 64.64 61.59
HORVU3Hr1G048560.1 Barley endoplasmic reticulum 61.04 61.45
Zm00001d044225_P001 Maize extracellular 62.16 61.33
Os01t0560000-01 Rice plasma membrane 61.04 61.31
KRH47174 Soybean endoplasmic reticulum, golgi, vacuole 60.59 61.0
CDY32874 Canola endoplasmic reticulum 60.81 60.27
OQU87019 Sorghum endoplasmic reticulum 61.94 55.89
KRH44220 Soybean cytosol 33.78 55.56
KRH44221 Soybean endoplasmic reticulum, extracellular 23.2 52.02
CDY12538 Canola cytosol, endoplasmic reticulum 33.33 50.51
KRH44218 Soybean golgi 60.14 50.09
KRH47173 Soybean cytosol, plastid 19.82 47.83
CDY42210 Canola mitochondrion 18.24 47.37
CDY28718 Canola endoplasmic reticulum 44.59 45.41
CDY14979 Canola endoplasmic reticulum 46.85 45.12
CDY51525 Canola endoplasmic reticulum 44.59 45.0
CDY14333 Canola endoplasmic reticulum 41.89 43.56
CDY60579 Canola endoplasmic reticulum 41.89 43.36
CDY09109 Canola cytoskeleton, cytosol, vacuole 5.86 36.62
CDX90411 Canola cytoskeleton, cytosol, vacuole 5.86 36.62
Protein Annotations
MapMan:19.4.5.6.6Gene3D:3.30.70.360Gene3D:3.40.630.10GO:A0A078DF02InterPro:AmidohydrolaseInterPro:Bact_exopeptidase_dim_dom
EnsemblPlants:CDX87841ProteinID:CDX87841ProteinID:CDX87841.1GO:GO:0003674GO:GO:0003824GO:GO:0008150
GO:GO:0008152GO:GO:0016787EnsemblPlantsGene:GSBRNA2T00147010001PFAM:PF01546PFAM:PF07687PIRSF:PIRSF005962
PANTHER:PTHR11014PANTHER:PTHR11014:SF55InterPro:Peptidase_M20InterPro:Peptidase_M20_dimerSUPFAM:SSF53187SUPFAM:SSF55031
SignalP:SignalP-noTMTIGRFAMs:TIGR01891UniParc:UPI0004EF1643SEG:seg::
Description
BnaC06g09030D
Coordinates
chrLK031852:+:553174..555900
Molecular Weight (calculated)
48695.4 Da
IEP (calculated)
6.265
GRAVY (calculated)
-0.109
Length
444 amino acids
Sequence
(BLAST)
001: MSFCKWVSFV LIIHLLNSCQ ISSSSSLTSN GFSQIPPKFL ALAKRDDFFD WMIGIRRKIH ENPELGYEEV ETSRLVRTEL EKMGVSYKYP VAVTGVIGYV
101: GTGQAPFVAL RADMDALAMQ EMVEWEHKSK VPGKMHACGH DAHTTMLLGA AKLLKEHQDE LQGTVILVFQ PAEEGGGGAK KIVEAGVLKD VSAIFGLHVT
201: NQLSLGQVSS REGPLLAGSG FFEAKISGKG GHAALPQHAI DPILAASNVI VSLQHLVSRE ADPLDSQVVT VAKFEGGGAF NVIPDSVTIG GTFRAFSTKS
301: FTQLKKRIEQ VITRQASVHM CNATVDFLEE EKPFFPPTVN DKDLHMFFKN VSGDMLGTQN YVEMQPLMGS EDFSFYQQAM PGHFSFVGMQ NEAHSPMASP
401: HSPYFEVNEE LLPYGASLHA SMATRYLLDL KTSSPNKSYQ KDEL
Best Arabidopsis Sequence Match ( AT1G51760.1 )
(BLAST)
001: MSFFKWVSFV LILHLLNPTL ISCSSNGLSQ IPSKFLTLAK RNDFFDWMVG IRRRIHENPE LGYEEVETSK LVRAELEKMG VSYKYPVAVT GVVGYVGTGH
101: APFVALRADM DALAMQEMVE WEHKSKVPGK MHACGHDAHT TMLLGAAKLL KEHEEELQGT VVLVFQPAEE GGGGAKKIVE AGVLENVSAI FGLHVTNQLA
201: LGQVSSREGP MLAGSGFFKA KISGKGGHAA LPQHTIDPIL AASNVIVSLQ HLVSREADPL DSQVVTVAKF EGGGAFNVIP DSVTIGGTFR AFSTKSFMQL
301: KKRIEQVITR QASVNMCNAT VDFIEEEKPF FPPTVNDKAL HQFFKNVSGD MLGIENYVEM QPLMGSEDFS FYQQAIPGHF SFVGMQNKAR SPMASPHSPY
401: FEVNEELLPY GASLHASMAT RYLLELKAST LNKSNKKDEL
Arabidopsis Description
ILL4JR3 [Source:UniProtKB/TrEMBL;Acc:A0A178W8I8]
SUBAcon: [endoplasmic reticulum]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.