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Soybean
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Soybean
Subcellular Localization
min:
: max

 
Winner_takes_all: endoplasmic reticulum

Predictor Summary:
  • extracellular 5
  • endoplasmic reticulum 8
  • vacuole 5
  • plasma membrane 5
  • golgi 5
  • plastid 3
Predictors GFP MS/MS Papers
Winner Takes All:endoplasmic reticulum
Any Predictor:plastid, secretory
BaCelLo:secretory
ChloroP:plastid
EpiLoc:plastid
iPSORT:secretory
MultiLoc:endoplasmic reticulum
Plant-mPloc:endoplasmic reticulum
Predotar:secretory
PProwler:secretory
TargetP:secretory
WoLF PSORT:plastid
YLoc:endoplasmic reticulum
 endoplasmic reticulum: 27224218
endoplasmic reticulum: 28499913
msms PMID: 28499913 doi
S Komatsu, X Wang, X Yin, Y Nanjo, H Ohyanagi, K Sakata
Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.
msms PMID: 27224218 doi
X Wang, S Komatsu
Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
KRH09985 Soybean endoplasmic reticulum 94.82 94.82
KRH47175 Soybean endoplasmic reticulum 75.0 75.34
KRH44216 Soybean extracellular 72.97 75.17
VIT_09s0002g02630.t01 Wine grape endoplasmic reticulum 74.55 75.06
KRH44214 Soybean endoplasmic reticulum 78.15 74.46
KRH44217 Soybean endoplasmic reticulum, golgi 73.2 73.36
PGSC0003DMT400006691 Potato endoplasmic reticulum 72.97 72.81
KRH47174 Soybean endoplasmic reticulum, golgi, vacuole 71.85 72.34
Solyc03g121270.2.1 Tomato endoplasmic reticulum, plastid 72.3 72.13
CDY69786 Canola endoplasmic reticulum, extracellular 57.66 71.51
AT1G51760.1 Thale cress endoplasmic reticulum 69.59 70.23
GSMUA_Achr7P24240_001 Banana endoplasmic reticulum 46.85 70.03
Bra030419.1-P Field mustard endoplasmic reticulum 68.92 68.92
CDY43926 Canola endoplasmic reticulum 68.69 68.69
CDX87841 Canola endoplasmic reticulum 68.69 68.69
CDY22869 Canola endoplasmic reticulum 67.79 68.1
Bra018932.1-P Field mustard endoplasmic reticulum 67.57 67.87
GSMUA_Achr4P15750_001 Banana endoplasmic reticulum 66.67 67.58
Os01t0560000-01 Rice plasma membrane 66.22 66.52
TraesCS3A01G204400.1 Wheat endoplasmic reticulum 63.74 65.36
KRH44220 Soybean cytosol 39.64 65.19
TraesCS3B01G232800.1 Wheat endoplasmic reticulum 63.74 65.06
TraesCS3D01G207700.2 Wheat endoplasmic reticulum 64.41 64.85
Zm00001d044225_P001 Maize extracellular 65.54 64.67
HORVU3Hr1G048560.1 Barley endoplasmic reticulum 64.19 64.63
AT1G51780.1 Thale cress endoplasmic reticulum 63.29 64.6
OQU87019 Sorghum endoplasmic reticulum 65.99 59.55
KRH44218 Soybean golgi 70.95 59.1
KRH44221 Soybean endoplasmic reticulum, extracellular 26.35 59.09
KRH47173 Soybean cytosol, plastid 23.2 55.98
KRH45754 Soybean endoplasmic reticulum 52.48 52.6
KRG99236 Soybean endoplasmic reticulum 51.8 52.15
KRH53263 Soybean endoplasmic reticulum 51.35 49.03
KRH64641 Soybean endoplasmic reticulum 50.23 47.85
KRH64274 Soybean endoplasmic reticulum, golgi, mitochondrion, plastid 46.4 43.92
Protein Annotations
EntrezGene:100794121MapMan:19.4.5.6.6Gene3D:3.30.70.360Gene3D:3.40.630.10EMBL:ACUP02008462InterPro:Amidohydrolase
InterPro:Bact_exopeptidase_dim_domEnsemblPlantsGene:GLYMA_13G352400GO:GO:0003674GO:GO:0003824GO:GO:0008150GO:GO:0008152
GO:GO:0016787UniProt:I1M5E5EnsemblPlants:KRH23345ProteinID:KRH23345ProteinID:KRH23345.1MEROPS:M20.A04
PFAM:PF01546PFAM:PF07687PIRSF:PIRSF005962PANTHER:PTHR11014PANTHER:PTHR11014:SF55InterPro:Peptidase_M20
InterPro:Peptidase_M20_dimerSUPFAM:SSF53187SUPFAM:SSF55031SignalP:SignalP-noTMTIGRFAMs:TIGR01891UniParc:UPI000233B257
SEG:seg:::::
Description
hypothetical protein
Coordinates
chr13:+:44126801..44130994
Molecular Weight (calculated)
48439.1 Da
IEP (calculated)
5.781
GRAVY (calculated)
0.040
Length
444 amino acids
Sequence
(BLAST)
001: MGFFLKWVNL FVFFHFLAAT PIFSDSSSSS NAIATTKFLD LAKDPRVFDW MVGIRRKIHE NPELGYEEFE TSKLIRAELD KLGISYKHPV AVTGVVGFIG
101: TGLPPFVALR ADMDALPMQE MVEWEHKSKV PGKMHACGHD AHVAMLLGAA KILKEHENEI RGTVVLVFQP AEEGGGGAKK ILDAGVLENI SAIFGLHIAP
201: TYPIGEVASR SGPIFAGSGF FEATINGRGG HAAIPQHSID PILAASNVIV SLQHIVSREA DPLDSQVVTV GKFQGGGAFN VIPDSVAIGG TFRAFSKESF
301: MQLRQRIEQV ITGQAAVQRC NATVNFLDDE KPFFPPTVNN GDLHEYFKSV AGSLLGVNNV KDMQPLMGSE DFAFYQEVFP GYFFLLGMEN VSIEHLESPH
401: SPYFKINEDA LPYGAALHAS LASSYLLKLN QDIPVVEGKH HDEL
Best Arabidopsis Sequence Match ( AT1G51760.1 )
(BLAST)
001: MSFFKWVSFV LILHLLNPTL ISCSSNGLSQ IPSKFLTLAK RNDFFDWMVG IRRRIHENPE LGYEEVETSK LVRAELEKMG VSYKYPVAVT GVVGYVGTGH
101: APFVALRADM DALAMQEMVE WEHKSKVPGK MHACGHDAHT TMLLGAAKLL KEHEEELQGT VVLVFQPAEE GGGGAKKIVE AGVLENVSAI FGLHVTNQLA
201: LGQVSSREGP MLAGSGFFKA KISGKGGHAA LPQHTIDPIL AASNVIVSLQ HLVSREADPL DSQVVTVAKF EGGGAFNVIP DSVTIGGTFR AFSTKSFMQL
301: KKRIEQVITR QASVNMCNAT VDFIEEEKPF FPPTVNDKAL HQFFKNVSGD MLGIENYVEM QPLMGSEDFS FYQQAIPGHF SFVGMQNKAR SPMASPHSPY
401: FEVNEELLPY GASLHASMAT RYLLELKAST LNKSNKKDEL
Arabidopsis Description
ILL4JR3 [Source:UniProtKB/TrEMBL;Acc:A0A178W8I8]
SUBAcon: [endoplasmic reticulum]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.