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Sorghum
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Sorghum
Subcellular Localization
min:
: max

 
Winner_takes_all: endoplasmic reticulum

Predictor Summary:
  • plastid 4
  • endoplasmic reticulum 4
  • extracellular 1
  • vacuole 1
  • plasma membrane 1
  • golgi 1
  • mitochondrion 1
Predictors GFP MS/MS Papers
Winner Takes All:endoplasmic reticulum
Any Predictor:mitochondrion, plastid, secretory
BaCelLo:plastid
ChloroP:plastid
iPSORT:plastid
MultiLoc:endoplasmic reticulum
Predotar:mitochondrion
PProwler:secretory
TargetP:plastid
WoLF PSORT:endoplasmic reticulum
YLoc:endoplasmic reticulum
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Zm00001d044225_P001 Maize extracellular 85.77 93.78
Os01t0560000-01 Rice plasma membrane 79.27 88.24
TraesCS3A01G204400.1 Wheat endoplasmic reticulum 76.22 86.61
TraesCS3B01G232800.1 Wheat endoplasmic reticulum 76.22 86.21
HORVU3Hr1G048560.1 Barley endoplasmic reticulum 77.24 86.17
TraesCS3D01G207700.2 Wheat endoplasmic reticulum 77.03 85.94
GSMUA_Achr4P15750_001 Banana endoplasmic reticulum 66.87 75.11
GSMUA_Achr7P24240_001 Banana endoplasmic reticulum 44.92 74.41
VIT_11s0016g02700.t01 Wine grape endoplasmic reticulum 59.96 67.2
VIT_09s0002g02630.t01 Wine grape endoplasmic reticulum 59.35 66.21
KRH23345 Soybean endoplasmic reticulum 59.55 65.99
PGSC0003DMT400006691 Potato endoplasmic reticulum 59.55 65.84
CDY69786 Canola endoplasmic reticulum, extracellular 47.56 65.36
Solyc03g121270.2.1 Tomato endoplasmic reticulum, plastid 58.74 64.94
KRH09985 Soybean endoplasmic reticulum 58.13 64.41
Solyc12g008690.1.1 Tomato endoplasmic reticulum 57.93 63.9
AT1G51760.1 Thale cress endoplasmic reticulum 57.11 63.86
PGSC0003DMT400000925 Potato endoplasmic reticulum 57.72 63.68
CDY22869 Canola endoplasmic reticulum 56.3 62.67
Bra018932.1-P Field mustard endoplasmic reticulum 56.1 62.44
CDX87841 Canola endoplasmic reticulum 55.89 61.94
CDY43926 Canola endoplasmic reticulum 55.89 61.94
Bra030419.1-P Field mustard endoplasmic reticulum 55.89 61.94
AT1G51780.1 Thale cress endoplasmic reticulum 53.86 60.92
KRH44216 Soybean extracellular 53.25 60.79
KRH47175 Soybean endoplasmic reticulum 54.27 60.41
KRH44214 Soybean endoplasmic reticulum 57.11 60.3
KRH47174 Soybean endoplasmic reticulum, golgi, vacuole 53.86 60.09
KRH44217 Soybean endoplasmic reticulum, golgi 54.06 60.05
EES03499 Sorghum endoplasmic reticulum 54.27 59.73
Bra006863.1-P Field mustard endoplasmic reticulum 51.83 58.09
CDX88581 Canola endoplasmic reticulum 51.63 57.86
KRH44220 Soybean cytosol 31.5 57.41
Bra002800.1-P Field mustard endoplasmic reticulum 51.42 56.98
CDY32768 Canola endoplasmic reticulum 51.22 56.76
AT5G56660.1 Thale cress endoplasmic reticulum 50.41 56.49
CDY32874 Canola endoplasmic reticulum 51.02 56.03
CDY11910 Canola endoplasmic reticulum 48.58 55.97
AT5G56650.1 Thale cress endoplasmic reticulum 48.78 54.79
EER93137 Sorghum cytosol 44.31 54.09
EER93138 Sorghum cytosol 44.72 52.76
EER96151 Sorghum endoplasmic reticulum 45.53 50.22
KRH44218 Soybean golgi 54.27 50.09
KRH47173 Soybean cytosol, plastid 18.7 50.0
KRH44221 Soybean endoplasmic reticulum, extracellular 20.12 50.0
EER96147 Sorghum mitochondrion 44.92 49.89
EER96149 Sorghum endoplasmic reticulum 44.51 48.78
OQU81996 Sorghum endoplasmic reticulum, extracellular 41.26 48.56
EER90283 Sorghum endoplasmic reticulum 47.76 45.63
EES15570 Sorghum endoplasmic reticulum 40.65 44.64
CDY42210 Canola mitochondrion 13.82 39.77
Protein Annotations
MapMan:19.4.5.6.6Gene3D:3.30.70.360Gene3D:3.40.630.10UniProt:A0A1W0VY11InterPro:AmidohydrolaseInterPro:Bact_exopeptidase_dim_dom
ncoils:CoilGO:GO:0003674GO:GO:0003824GO:GO:0005575GO:GO:0008150GO:GO:0008152
GO:GO:0016020GO:GO:0016021GO:GO:0016787EnsemblPlants:OQU87019ProteinID:OQU87019ProteinID:OQU87019.1
PFAM:PF01546PFAM:PF07687PANTHER:PTHR11014PANTHER:PTHR11014:SF55InterPro:Peptidase_M20InterPro:Peptidase_M20_dimer
EnsemblPlantsGene:SORBI_3003G190500SUPFAM:SSF53187SUPFAM:SSF55031TIGRFAMs:TIGR01891TMHMM:TMhelixUniParc:UPI0009DC85E7
SEG:seg:::::
Description
hypothetical protein
Coordinates
chr3:-:51167150..51172379
Molecular Weight (calculated)
52643.9 Da
IEP (calculated)
6.327
GRAVY (calculated)
-0.046
Length
492 amino acids
Sequence
(BLAST)
001: MKRVQAPPSC ALASKARPAG FTVVSRSHLI PSASSANQTH PSQQPMAAAA PPLLLAGLAL AVVAAAVWPS LAAAPAALQD PAELLRRAKE PAFADWMVGV
101: RRRIHENPEL GYEEFQTSEL VRRELDALGI PYRHPFAVTG VVATVGTGGP PFVALRADMD ALPLQESVEW EHKSKVPGKM HGCGHDAHVA MLLGSAKILQ
201: EHRDELKGTV VLVFQPAEEG GGGAQKMIEA GALENIDAIF GLHIADSVPI GVLASRPGPI MAGSGFFEAV ISGKGGHAAL PHHTIDPILA ASNVIVSLQQ
301: LVSREADPLD SQVVTVGKFQ GGGAFNVIPD SVTIGGTFRA FLKESFNQLK QRIEEVIVSQ ASVQRCSASV DFLTKDRPFF PPTINSPELH DFFVNVASEM
401: VGSRNVRDRQ PLMGAEDFSF YAEAIPSTYY YFVGMYNETR GPQAPHHSPY FTINEDALPY GAAAQAALAA RYLLEHQQPA ATTDKAKPHD EL
Best Arabidopsis Sequence Match ( AT1G51760.1 )
(BLAST)
001: MSFFKWVSFV LILHLLNPTL ISCSSNGLSQ IPSKFLTLAK RNDFFDWMVG IRRRIHENPE LGYEEVETSK LVRAELEKMG VSYKYPVAVT GVVGYVGTGH
101: APFVALRADM DALAMQEMVE WEHKSKVPGK MHACGHDAHT TMLLGAAKLL KEHEEELQGT VVLVFQPAEE GGGGAKKIVE AGVLENVSAI FGLHVTNQLA
201: LGQVSSREGP MLAGSGFFKA KISGKGGHAA LPQHTIDPIL AASNVIVSLQ HLVSREADPL DSQVVTVAKF EGGGAFNVIP DSVTIGGTFR AFSTKSFMQL
301: KKRIEQVITR QASVNMCNAT VDFIEEEKPF FPPTVNDKAL HQFFKNVSGD MLGIENYVEM QPLMGSEDFS FYQQAIPGHF SFVGMQNKAR SPMASPHSPY
401: FEVNEELLPY GASLHASMAT RYLLELKAST LNKSNKKDEL
Arabidopsis Description
ILL4JR3 [Source:UniProtKB/TrEMBL;Acc:A0A178W8I8]
SUBAcon: [endoplasmic reticulum]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.