CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 1
mitochondrion 5
endoplasmic reticulum 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY32768	Canola	endoplasmic reticulum	92.4	35.59
Bra002800.1-P	Field mustard	endoplasmic reticulum	90.06	34.68
CDX90411	Canola	cytoskeleton, cytosol, vacuole	14.04	33.8
CDY09109	Canola	cytoskeleton, cytosol, vacuole	14.04	33.8
CDY32874	Canola	endoplasmic reticulum	81.29	31.03
CDX88581	Canola	endoplasmic reticulum	73.68	28.7
CDY11910	Canola	endoplasmic reticulum	71.34	28.57
AT5G56660.1	Thale cress	endoplasmic reticulum	68.42	26.65
AT5G56650.1	Thale cress	endoplasmic reticulum	65.5	25.57
CDY12538	Canola	cytosol, endoplasmic reticulum	34.5	20.14
CDY22869	Canola	endoplasmic reticulum	47.37	18.33
CDX87841	Canola	endoplasmic reticulum	47.37	18.24
CDY43926	Canola	endoplasmic reticulum	46.2	17.79
GSMUA_Achr4P15750_001	Banana	endoplasmic reticulum	41.52	16.21
Os01t0560000-01	Rice	plasma membrane	40.94	15.84
TraesCS3B01G232800.1	Wheat	endoplasmic reticulum	38.6	15.17
TraesCS3A01G204400.1	Wheat	endoplasmic reticulum	38.01	15.01
TraesCS3D01G207700.2	Wheat	endoplasmic reticulum	38.6	14.97
Zm00001d044225_P001	Maize	extracellular	38.6	14.67
HORVU3Hr1G048560.1	Barley	endoplasmic reticulum	36.84	14.29
OQU87019	Sorghum	endoplasmic reticulum	39.77	13.82
CDY14979	Canola	endoplasmic reticulum	35.67	13.23
CDY14333	Canola	endoplasmic reticulum	29.82	11.94
CDY28718	Canola	endoplasmic reticulum	30.41	11.93
CDY51525	Canola	endoplasmic reticulum	30.41	11.82
CDY60579	Canola	endoplasmic reticulum	29.24	11.65
CDY69786	Canola	endoplasmic reticulum, extracellular	22.22	10.61
GSMUA_Achr7P24240_001	Banana	endoplasmic reticulum	6.43	3.7

Protein Annotations

EnsemblPlants:CDY42210	EnsemblPlantsGene:GSBRNA2T00074422001	Gene3D:3.40.630.10	GO:A0A078HUM0	GO:GO:0003674	GO:GO:0003824
GO:GO:0008150	GO:GO:0008152	GO:GO:0016787	InterPro:Peptidase_M20	PANTHER:PTHR11014	PANTHER:PTHR11014:SF119
PFAM:PF01546	ProteinID:CDY42210	ProteinID:CDY42210.1	SUPFAM:SSF53187	UniParc:UPI0004EF01CD	UniProt:A0A078HUM0
MapMan:35.1	:	:	:	:	:

Description

BnaA01g25850DBnaA01g25850D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HUM0]

Coordinates

chrLK032518:+:116630..117571

Molecular Weight (calculated)

19215.8 Da

IEP (calculated)

6.682

GRAVY (calculated)

-0.333

Length

171 amino acids

Sequence
(BLAST)

001: MFELKLRIYI VINHWYLRGT LRAFTSFSQL EQRVKEVITK QATVQRCNAS VNLRPNGKEP LPPTVNDVGL YKQFKNMVGD LLGEESFVEA SPIMGGEDFS
101: YFADAIPGHF AFLGMQDESK SYASAHSSLY RVNEDALPYG AAVHASMAVQ YLKDKKVSKG SDTPKDFHDE L

Best Arabidopsis Sequence Match ( AT1G51760.1 )
(BLAST)

001: MSFFKWVSFV LILHLLNPTL ISCSSNGLSQ IPSKFLTLAK RNDFFDWMVG IRRRIHENPE LGYEEVETSK LVRAELEKMG VSYKYPVAVT GVVGYVGTGH
101: APFVALRADM DALAMQEMVE WEHKSKVPGK MHACGHDAHT TMLLGAAKLL KEHEEELQGT VVLVFQPAEE GGGGAKKIVE AGVLENVSAI FGLHVTNQLA
201: LGQVSSREGP MLAGSGFFKA KISGKGGHAA LPQHTIDPIL AASNVIVSLQ HLVSREADPL DSQVVTVAKF EGGGAFNVIP DSVTIGGTFR AFSTKSFMQL
301: KKRIEQVITR QASVNMCNAT VDFIEEEKPF FPPTVNDKAL HQFFKNVSGD MLGIENYVEM QPLMGSEDFS FYQQAIPGHF SFVGMQNKAR SPMASPHSPY
401: FEVNEELLPY GASLHASMAT RYLLELKAST LNKSNKKDEL

Arabidopsis Description

ILL4JR3 [Source:UniProtKB/TrEMBL;Acc:A0A178W8I8]
SUBAcon: [endoplasmic reticulum]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.