CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
plastid 1
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	nucleus
ChloroP:	plastid
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY11819	Canola	cytosol	88.62	88.15
CDY66147	Canola	nucleus	11.47	77.51
Bra010950.1-P	Field mustard	cytosol	85.9	77.49
CDY66146	Canola	cytosol	41.68	65.66
AT1G27430.1	Thale cress	cytosol	64.27	49.2
AT1G24300.1	Thale cress	cytosol	62.61	47.83
PGSC0003DMT400006082	Potato	cytosol	16.2	25.34
PGSC0003DMT400028024	Potato	nucleus	31.87	23.58
Solyc05g015930.2.1	Tomato	cytosol	31.52	23.32
Solyc05g015920.2.1	Tomato	nucleus	31.7	23.19
Os01t0924600-01	Rice	plasma membrane	8.49	21.27
VIT_01s0146g00140.t01	Wine grape	nucleus	17.43	21.04
VIT_14s0068g01650.t01	Wine grape	nucleus	28.11	19.28
TraesCS3A01G436500.1	Wheat	endoplasmic reticulum, plasma membrane	25.39	18.84
TraesCS3D01G428900.1	Wheat	cytosol	24.78	18.79
TraesCS3B01G470800.2	Wheat	cytosol	25.31	18.71
KRH06906	Soybean	cytosol	26.44	18.69
KRG94582	Soybean	cytosol	26.44	18.69
HORVU3Hr1G095420.3	Barley	cytosol, nucleus	25.13	18.52
KXG34019	Sorghum	cytosol	24.08	17.93
GSMUA_Achr7P02660_001	Banana	cytosol	24.34	17.8
Zm00001d011981_P007	Maize	cytosol	23.82	17.58
Zm00001d011983_P003	Maize	cytosol	23.56	17.51
GSMUA_Achr4P15970_001	Banana	cytosol	24.69	17.43
GSMUA_AchrUn_...	Banana	cytosol	23.82	17.07
CDY71257	Canola	cytosol, nucleus	4.9	10.47
CDY32971	Canola	nucleus	17.16	9.55

Protein Annotations

EnsemblPlants:CDY11817	EnsemblPlantsGene:GSBRNA2T00050077001	Gene3D:3.30.1490.40	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:GYF	InterPro:GYF-like_dom_sf	InterPro:IPR003169	InterPro:IPR035445	ncoils:Coil	PANTHER:PTHR14445
PANTHER:PTHR14445:SF41	PFAM:PF02213	PFscan:PS50829	ProteinID:CDY11817	ProteinID:CDY11817.1	SEG:seg
SMART:SM00444	SUPFAM:SSF55277	UniParc:UPI0004EDF4EA	UniProt:A0A078FFP5	MapMan:35.2	:

Description

BnaC03g57610DBnaC03g57610D protein [Source:UniProtKB/TrEMBL;Acc:A0A078FFP5]

Coordinates

chrLK032014:+:812125..816878

Molecular Weight (calculated)

126179.0 Da

IEP (calculated)

6.120

GRAVY (calculated)

-0.807

Length

1142 amino acids

Sequence
(BLAST)

0001: MEQLHSGGPN SYRAAPGFGL DKGRSESPNI GFTVGRGRAR GTWSAFFGAG GFLRNESVPG KPAPTCRYVR GKLLDLYRNQ KPDRMPIDME DVDSVTQVAL
0101: IEPLAFIAPD VEEEESLKGI WKGRITGSEA HTSPGDESLA EKSLGETKVD GGLLGVVSGD SVSMHNSNSG LLGSHGGGLW GASESDKVSH GSPEAVRSAF
0201: TKSSMLDAGE PLVEQGYTGK LQQPDIEVNH SEGTLPPEEF MFSYIDPQGV IQGPFIGSDI ISWFEQGFFG TDLQVRLATA PEGTPFQDLG TVMSYLKTES
0301: MQAHINDQIS ELEETSRKAN SGIGLSFAPV SESNGSALGH DNVQMKSKSE AYVKPPHVDD RSFLDYSAQD EEIVFPGRAG VSGYGSAKSS TSMHDALMGV
0401: SGHSAIPVES AKVATQNQNE NKLHPFGVLW SELESSSTPV DLLPNRSYDT GHDQKYLDQA QNLDHLLTLK LQQQQQQQQQ KIQLQQQQKI QLQQRQLEQE
0501: YQLQQKLLQE QQQSHARNLH FQQILQGQTP DSRLGQSHDF HRLNNVDQML LEQQLMDELQ SSGHRSQNFT PYMEQLAAGN FGQLPHEGHQ NELLLEQLLS
0601: EQMQSQYRQM QLEELRHIDP QHGQLQSEPI RSLEYQMMQQ EQLMQLATRA RHNTLLEEHR HIDPLWPSNR NDQLLGAHPG IHRSHSSAGF RPVDFHQQQQ
0701: RPPFEDHFSH LERNLSYQQQ LNQELFEQGL PFERSTSLPR NTSGLNLDAG RGLNLSELRD AQMQSSGRLG NSTPGFSHQN PHTQLGEPHF SEMEPRKERW
0801: HGADTQLAGG WAETQFHRPN TEADHRKMRR QGEDSNSWMV DGHTDEKSKQ LFMELLHQRP GHQPLESPSM NRGEPYDRMA ASGFGFADHG GRQNASSSFG
0901: SHASSDEHVN GLPGDGNYMG SLQRNNSLLS GSIDGGRKNE TKDFSNMLGM MSKDANDIRT WNNAPPKKEG AGLMSFEAQD RMGKQAVMDS LVQGEVPVAT
1001: LGRQSSSSIS GSYCDNLVGE VRKDRLVVPS HGQVSVLLKR PPSSHSSSPH EGLLEQMSDA ANRTAVGNKG SKASFSEMLK NSSSSSSMKK VAAEPSSDPN
1101: EGNKGGGGKK KGKKGRQLDP ALLGFKVTSN RLMGEIHRAD DF

Best Arabidopsis Sequence Match ( AT1G24300.1 )
(BLAST)

0001: MAEGKFDLPD DLILSKSSDQ LKELASDNSI PLSPQWLYTK SSESKMDVRS PTPMPMGNPS DPNLKDAWRL DAPEDKKDWK KIVSENETNR RWREEERETG
0101: LLGARKVDRR KTERRIDNVS SRETGEVKTT AASDRWNDVN SRAAVHEPRR DNKWSSRWGP DDKEKEARCE KVEINKDKEE PQSESQSVVS NVRATSERDS
0201: DPRDKWRPRH RMESQSGVPT SYRTAPGFGL DRGRAEGPNL GFTVGRGRAS TIGRGSSTSL IGAGSASAPV FRYPRGKLLD MYRKQKPDPS LGRIPTEMDE
0301: VASITQVALI EPLAFIAPDT EEEASINGIW KGRIISSEVY TSSGEESLGE NSLLKCRIPE SGETKVDGAL LGFMNGDNGS MKNNDSGLLG SHNGGLGAAS
0401: SVPRLNSVAS ESYGSFGAGY QVSHGSPEAV RSVFTKSPVL DGSESVVGSF EQDYMGKLQQ PDVEVDQSEA AMPPEDFLFL YIDPQGVIQG PFIGSDIISW
0501: FEQGFFGTDL QVRLANAPEG TPFQDLGRVM SYLKTESAHA HISNQESELE ETRLKANSDT GLSIAPVAES NDSSSMNGTS RSFSVYNNPS AQDNFQRKSE
0601: SEFYATPPHT EDRSFLDFST QDEEIVFPGR AGVSGYASVK SSTSMHDAFM EVSGQSAIPV ESTKAATQKQ HENKLHPFGV LWSELESSNV PVNLLPNRSY
0701: DAMGEPTGAI DNRPIDSRRN TQVDPNMSLD GLASNRMSQF EHLSNRFNLG DQLSSNQHNQ QQFQNRDMLS HSHIGDQAQD LDYLITLQLQ QQQKIQLQQQ
0801: QKIQLQQQQK IQLQQQQKMQ LQQHQLEQEH QLHQKLLQEQ QQSHARQLHY QQILQGQTPD SRFGQSHDFP RSNNVDQMLL EHQLMNELQK SSGHPSQNFA
0901: PYIEQLAAGN FGQLPHEGHQ RELLEQLLST KMQSQYGPMQ SPYGQLQSEP TRSLEYQLLQ QEQLMQLANG VRHNTLLEEQ RHIDPLWPSD HNDQLLRSHP
1001: GIQRSRSSTG FRQLDFHQQQ QRPPFEDQFG QLERNLLYQQ QLRQELFEQG LPFERSASLP VSVSGMNLDP VNGLGLSQGL ELRDATTHMQ IGNSTLGFNH
1101: QNPRIPIGEP HFSQLESMEG RWSGADTQVV GDWAESQLHR SNIDAEHHKM RSESRRMGED SNSWMLGGTT EDRSKQLFME LLHQRPGHQS AESPSMNRGQ
1201: SFDRMAPSGL TPGIQTLGGY SDHGGSHNAP STFGARAFSD EQINRSSGDR NNMGSLHRNN SLLSGIIDGG RSTQNETQAF SNMYAMNKDA NDIKTWNNVP
1301: PKNEGMGRMM SFEAQDRMGK QAVLDSLVHG ELPVVTPGQQ SSLNISDQYS DNLVGEDRRK DRLVVPSHGQ NSVLLKRPPS SHSSSSHEGL IERISDTASR
1401: TAASSYSGIE GGVRRESGAA GNKGSTSEAT SFSEMLKKSN SMKKVAAESN DVTEGSKGGG GKKKGKKGRQ IDPALLGFKV TSNRIMGEIH RADDF

Arabidopsis Description

GYF domain-containing protein [Source:UniProtKB/TrEMBL;Acc:F4I983]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.