Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| AT1G27430.1 | Thale cress | cytosol | 84.95 | 85.12 |
| CDY11817 | Canola | cytosol | 47.83 | 62.61 |
| CDY11819 | Canola | cytosol | 45.69 | 59.49 |
| Bra010950.1-P | Field mustard | cytosol | 49.5 | 58.45 |
| Bra010951.1-P | Field mustard | cytosol | 41.34 | 58.36 |
| CDY66147 | Canola | nucleus | 6.49 | 57.4 |
| CDY66146 | Canola | cytosol | 27.22 | 56.14 |
| VIT_01s0146g00140.t01 | Wine grape | nucleus | 23.08 | 36.47 |
| Solyc05g015930.2.1 | Tomato | cytosol | 35.45 | 34.33 |
| PGSC0003DMT400028024 | Potato | nucleus | 35.32 | 34.2 |
| Solyc05g015920.2.1 | Tomato | nucleus | 35.52 | 34.02 |
| VIT_14s0068g01650.t01 | Wine grape | nucleus | 32.37 | 29.07 |
| PGSC0003DMT400006082 | Potato | cytosol | 14.18 | 29.04 |
| KRH06906 | Soybean | cytosol | 29.77 | 27.54 |
| KRG94582 | Soybean | cytosol | 29.63 | 27.41 |
| KXG34019 | Sorghum | cytosol | 27.56 | 26.86 |
| TraesCS3B01G470800.2 | Wheat | cytosol | 27.49 | 26.6 |
| TraesCS3A01G436500.1 | Wheat | endoplasmic reticulum, plasma membrane | 27.36 | 26.58 |
| TraesCS3D01G428900.1 | Wheat | cytosol | 26.69 | 26.49 |
| HORVU3Hr1G095420.3 | Barley | cytosol, nucleus | 27.22 | 26.26 |
| Zm00001d011983_P003 | Maize | cytosol | 26.89 | 26.17 |
| GSMUA_Achr7P02660_001 | Banana | cytosol | 27.09 | 25.93 |
| Zm00001d011981_P007 | Maize | cytosol | 26.49 | 25.6 |
| GSMUA_AchrUn_... | Banana | cytosol | 27.16 | 25.49 |
| GSMUA_Achr4P15970_001 | Banana | cytosol | 26.89 | 24.85 |
| Os01t0924600-01 | Rice | plasma membrane | 7.22 | 23.68 |
| AT5G42950.1 | Thale cress | cytosol | 16.92 | 14.76 |
Protein Annotations
| Gene3D:3.30.1490.40 | MapMan:35.2 | EntrezGene:839046 | ProteinID:AEE30513.1 | ArrayExpress:AT1G24300 | EnsemblPlantsGene:AT1G24300 |
| RefSeq:AT1G24300 | TAIR:AT1G24300 | RefSeq:AT1G24300-TAIR-G | EnsemblPlants:AT1G24300.1 | TAIR:AT1G24300.1 | Unigene:At.21754 |
| ncoils:Coil | UniProt:F4I983 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0009507 | GO:GO:0009536 | InterPro:GYF |
| InterPro:GYF-like_dom_sf | InterPro:IPR003169 | InterPro:IPR035445 | RefSeq:NP_173840.4 | PFAM:PF02213 | PO:PO:0000005 |
| PO:PO:0000293 | PFscan:PS50829 | PANTHER:PTHR14445 | PANTHER:PTHR14445:SF41 | SMART:SM00444 | SUPFAM:SSF55277 |
| UniParc:UPI0001A7B1AE | SEG:seg | : | : | : | : |
Description
GYF domain-containing protein [Source:UniProtKB/TrEMBL;Acc:F4I983]
Coordinates
chr1:-:8614363..8620664
Molecular Weight (calculated)
166280.0 Da
IEP (calculated)
5.923
GRAVY (calculated)
-0.871
Length
1495 amino acids
Sequence
(BLAST)
(BLAST)
0001: MAEGKFDLPD DLILSKSSDQ LKELASDNSI PLSPQWLYTK SSESKMDVRS PTPMPMGNPS DPNLKDAWRL DAPEDKKDWK KIVSENETNR RWREEERETG
0101: LLGARKVDRR KTERRIDNVS SRETGEVKTT AASDRWNDVN SRAAVHEPRR DNKWSSRWGP DDKEKEARCE KVEINKDKEE PQSESQSVVS NVRATSERDS
0201: DPRDKWRPRH RMESQSGVPT SYRTAPGFGL DRGRAEGPNL GFTVGRGRAS TIGRGSSTSL IGAGSASAPV FRYPRGKLLD MYRKQKPDPS LGRIPTEMDE
0301: VASITQVALI EPLAFIAPDT EEEASINGIW KGRIISSEVY TSSGEESLGE NSLLKCRIPE SGETKVDGAL LGFMNGDNGS MKNNDSGLLG SHNGGLGAAS
0401: SVPRLNSVAS ESYGSFGAGY QVSHGSPEAV RSVFTKSPVL DGSESVVGSF EQDYMGKLQQ PDVEVDQSEA AMPPEDFLFL YIDPQGVIQG PFIGSDIISW
0501: FEQGFFGTDL QVRLANAPEG TPFQDLGRVM SYLKTESAHA HISNQESELE ETRLKANSDT GLSIAPVAES NDSSSMNGTS RSFSVYNNPS AQDNFQRKSE
0601: SEFYATPPHT EDRSFLDFST QDEEIVFPGR AGVSGYASVK SSTSMHDAFM EVSGQSAIPV ESTKAATQKQ HENKLHPFGV LWSELESSNV PVNLLPNRSY
0701: DAMGEPTGAI DNRPIDSRRN TQVDPNMSLD GLASNRMSQF EHLSNRFNLG DQLSSNQHNQ QQFQNRDMLS HSHIGDQAQD LDYLITLQLQ QQQKIQLQQQ
0801: QKIQLQQQQK IQLQQQQKMQ LQQHQLEQEH QLHQKLLQEQ QQSHARQLHY QQILQGQTPD SRFGQSHDFP RSNNVDQMLL EHQLMNELQK SSGHPSQNFA
0901: PYIEQLAAGN FGQLPHEGHQ RELLEQLLST KMQSQYGPMQ SPYGQLQSEP TRSLEYQLLQ QEQLMQLANG VRHNTLLEEQ RHIDPLWPSD HNDQLLRSHP
1001: GIQRSRSSTG FRQLDFHQQQ QRPPFEDQFG QLERNLLYQQ QLRQELFEQG LPFERSASLP VSVSGMNLDP VNGLGLSQGL ELRDATTHMQ IGNSTLGFNH
1101: QNPRIPIGEP HFSQLESMEG RWSGADTQVV GDWAESQLHR SNIDAEHHKM RSESRRMGED SNSWMLGGTT EDRSKQLFME LLHQRPGHQS AESPSMNRGQ
1201: SFDRMAPSGL TPGIQTLGGY SDHGGSHNAP STFGARAFSD EQINRSSGDR NNMGSLHRNN SLLSGIIDGG RSTQNETQAF SNMYAMNKDA NDIKTWNNVP
1301: PKNEGMGRMM SFEAQDRMGK QAVLDSLVHG ELPVVTPGQQ SSLNISDQYS DNLVGEDRRK DRLVVPSHGQ NSVLLKRPPS SHSSSSHEGL IERISDTASR
1401: TAASSYSGIE GGVRRESGAA GNKGSTSEAT SFSEMLKKSN SMKKVAAESN DVTEGSKGGG GKKKGKKGRQ IDPALLGFKV TSNRIMGEIH RADDF
0101: LLGARKVDRR KTERRIDNVS SRETGEVKTT AASDRWNDVN SRAAVHEPRR DNKWSSRWGP DDKEKEARCE KVEINKDKEE PQSESQSVVS NVRATSERDS
0201: DPRDKWRPRH RMESQSGVPT SYRTAPGFGL DRGRAEGPNL GFTVGRGRAS TIGRGSSTSL IGAGSASAPV FRYPRGKLLD MYRKQKPDPS LGRIPTEMDE
0301: VASITQVALI EPLAFIAPDT EEEASINGIW KGRIISSEVY TSSGEESLGE NSLLKCRIPE SGETKVDGAL LGFMNGDNGS MKNNDSGLLG SHNGGLGAAS
0401: SVPRLNSVAS ESYGSFGAGY QVSHGSPEAV RSVFTKSPVL DGSESVVGSF EQDYMGKLQQ PDVEVDQSEA AMPPEDFLFL YIDPQGVIQG PFIGSDIISW
0501: FEQGFFGTDL QVRLANAPEG TPFQDLGRVM SYLKTESAHA HISNQESELE ETRLKANSDT GLSIAPVAES NDSSSMNGTS RSFSVYNNPS AQDNFQRKSE
0601: SEFYATPPHT EDRSFLDFST QDEEIVFPGR AGVSGYASVK SSTSMHDAFM EVSGQSAIPV ESTKAATQKQ HENKLHPFGV LWSELESSNV PVNLLPNRSY
0701: DAMGEPTGAI DNRPIDSRRN TQVDPNMSLD GLASNRMSQF EHLSNRFNLG DQLSSNQHNQ QQFQNRDMLS HSHIGDQAQD LDYLITLQLQ QQQKIQLQQQ
0801: QKIQLQQQQK IQLQQQQKMQ LQQHQLEQEH QLHQKLLQEQ QQSHARQLHY QQILQGQTPD SRFGQSHDFP RSNNVDQMLL EHQLMNELQK SSGHPSQNFA
0901: PYIEQLAAGN FGQLPHEGHQ RELLEQLLST KMQSQYGPMQ SPYGQLQSEP TRSLEYQLLQ QEQLMQLANG VRHNTLLEEQ RHIDPLWPSD HNDQLLRSHP
1001: GIQRSRSSTG FRQLDFHQQQ QRPPFEDQFG QLERNLLYQQ QLRQELFEQG LPFERSASLP VSVSGMNLDP VNGLGLSQGL ELRDATTHMQ IGNSTLGFNH
1101: QNPRIPIGEP HFSQLESMEG RWSGADTQVV GDWAESQLHR SNIDAEHHKM RSESRRMGED SNSWMLGGTT EDRSKQLFME LLHQRPGHQS AESPSMNRGQ
1201: SFDRMAPSGL TPGIQTLGGY SDHGGSHNAP STFGARAFSD EQINRSSGDR NNMGSLHRNN SLLSGIIDGG RSTQNETQAF SNMYAMNKDA NDIKTWNNVP
1301: PKNEGMGRMM SFEAQDRMGK QAVLDSLVHG ELPVVTPGQQ SSLNISDQYS DNLVGEDRRK DRLVVPSHGQ NSVLLKRPPS SHSSSSHEGL IERISDTASR
1401: TAASSYSGIE GGVRRESGAA GNKGSTSEAT SFSEMLKKSN SMKKVAAESN DVTEGSKGGG GKKKGKKGRQ IDPALLGFKV TSNRIMGEIH RADDF
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.