Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| AT1G24300.1 | Thale cress | cytosol | 85.12 | 84.95 |
| CDY11817 | Canola | cytosol | 49.2 | 64.27 |
| CDY11819 | Canola | cytosol | 46.65 | 60.63 |
| CDY66147 | Canola | nucleus | 6.84 | 60.35 |
| Bra010951.1-P | Field mustard | cytosol | 41.89 | 59.02 |
| Bra010950.1-P | Field mustard | cytosol | 49.93 | 58.85 |
| CDY66146 | Canola | cytosol | 26.61 | 54.76 |
| VIT_01s0146g00140.t01 | Wine grape | nucleus | 23.19 | 36.58 |
| PGSC0003DMT400028024 | Potato | nucleus | 35.59 | 34.39 |
| Solyc05g015930.2.1 | Tomato | cytosol | 35.46 | 34.26 |
| Solyc05g015920.2.1 | Tomato | nucleus | 35.79 | 34.21 |
| PGSC0003DMT400006082 | Potato | cytosol | 14.81 | 30.27 |
| VIT_14s0068g01650.t01 | Wine grape | nucleus | 32.24 | 28.89 |
| KRH06906 | Soybean | cytosol | 30.03 | 27.72 |
| KRG94582 | Soybean | cytosol | 29.96 | 27.66 |
| KXG34019 | Sorghum | cytosol | 28.02 | 27.25 |
| TraesCS3D01G428900.1 | Wheat | cytosol | 27.14 | 26.89 |
| TraesCS3B01G470800.2 | Wheat | cytosol | 27.82 | 26.86 |
| TraesCS3A01G436500.1 | Wheat | endoplasmic reticulum, plasma membrane | 27.61 | 26.77 |
| GSMUA_AchrUn_... | Banana | cytosol | 28.35 | 26.55 |
| HORVU3Hr1G095420.3 | Barley | cytosol, nucleus | 27.41 | 26.39 |
| GSMUA_Achr7P02660_001 | Banana | cytosol | 27.61 | 26.38 |
| Zm00001d011983_P003 | Maize | cytosol | 27.14 | 26.37 |
| Zm00001d011981_P007 | Maize | cytosol | 26.74 | 25.79 |
| GSMUA_Achr4P15970_001 | Banana | cytosol | 27.75 | 25.59 |
| Os01t0924600-01 | Rice | plasma membrane | 6.84 | 22.37 |
| AT5G42950.1 | Thale cress | cytosol | 16.76 | 14.59 |
Protein Annotations
| Gene3D:3.30.1490.40 | MapMan:35.2 | EntrezGene:839633 | ProteinID:AEE30828.1 | ArrayExpress:AT1G27430 | EnsemblPlantsGene:AT1G27430 |
| RefSeq:AT1G27430 | TAIR:AT1G27430 | RefSeq:AT1G27430-TAIR-G | EnsemblPlants:AT1G27430.1 | TAIR:AT1G27430.1 | Unigene:At.27875 |
| ncoils:Coil | UniProt:F4HSW8 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0008150 |
| InterPro:GYF | InterPro:GYF-like_dom_sf | InterPro:IPR003169 | InterPro:IPR035445 | RefSeq:NP_174063.4 | PFAM:PF02213 |
| PO:PO:0000084 | PO:PO:0000293 | PO:PO:0009047 | PFscan:PS50829 | PANTHER:PTHR14445 | PANTHER:PTHR14445:SF41 |
| SMART:SM00444 | SUPFAM:SSF55277 | UniParc:UPI0001E92A8F | SEG:seg | : | : |
Description
GYF domain-containing protein [Source:UniProtKB/TrEMBL;Acc:F4HSW8]
Coordinates
chr1:-:9520825..9527280
Molecular Weight (calculated)
165444.0 Da
IEP (calculated)
6.165
GRAVY (calculated)
-0.873
Length
1492 amino acids
Sequence
(BLAST)
(BLAST)
0001: MAEGKFDLPD DLIFSKSSDQ LKELASDNSI PLSPQWLYTK SSEYKMDVRS PTPVPMGNPS DPNPKDAWRL DAPEDKKDWK KIVHENETSR RWREEERETG
0101: LLGARKVDRR KTERRIDSVS SRETGDIKNA AASDRWNDVN SRAAVHEPRR DNKWSSRWGP DDKEKEARCE KVDINKDKEE PQSESQSVVS NVRATSERDS
0201: DTRDKWRPRH RMESQSGGPS SYRAAPGFGL DRGRAEGPNL GFTVGRGRAS TIGRGSSTSL IGAGSALSPV FRYPRGKLLD MYRKQKPDSS LGRILTEMDE
0301: VASITQVALI EPLAFIAPDA EEEANLNGIW KGRIISSEVY TSSGEESLGG NSLLKCRIPE SGETKVDGAL LGFMNGDNGS MKNNDSGLLG SHNGGLGAAS
0401: SVPRLNSVAS ESYGSGGAGY QLSHGSPEAV RSVFTKSSVL DGSESVVGSF EQAYTGKLQQ PDTEVDHSEG AMPPEEFLFL YIDPQGVIQG PFIGSDIISW
0501: FEQGFFGTDL QVRLASAPEG TPFQDLGRVM SYIKAESVHA HISDQKSELE ETSLKANSEA GGSVAHVAES NDSSSLTGIS RSFSVYNNPS GQDNFQRKSE
0601: SEVYGRPPHA EDQSFLDFSA QDEEIVFPGR ARVSGYASSV KSSTSMHDAL MEFSGHSDIP VEVTTAATRN QNENKLHPFG VLWSELEGGS TPVNPLPNRS
0701: SGAMGEPSCS IENRPINSRR NSQIDPNISL DALSGNRMSQ FEHESNFFNH GDQLPSNQHH QQHFQNRDML SHLHIGDQDL EHLITLQLQQ QQKIQMQQQQ
0801: KIQLQQQQKI QLQQHQLEQE HQLHQKLLQE QQQSHARQLH FQQILQGQTP DTRFGQSHDF PRSNSVDQML LEQQMLNELQ KSSGHPSQNF APYIEQHAAG
0901: NFGRFTHEGH QRELLEQLFS TQMQSQYGQK QSQYGQMQSQ HGQLQSEPIR SLEYQLLQQE QLMQLANGVR HNTLLEEQRH IDPLWPSDHS DQLLRTHPGI
1001: HRSHSSAGFR PLDFHQQQQR PHFEDQFSQL ERNRSYQQQL RLELLEHGLP FERSASGLNL DAVNGLGLSQ GLELRDATAH MQSSGRLGNS TPGFSHQNPR
1101: IPLGESHFSH LEPTEGRWSG ADTQLAGDWA ESQFRRSNMD TEHDKMRSEI RRLGEDPNSW MVGGSTDDKS KQLFMELLHQ RPGHQSAESP NMNRGYPYDR
1201: MVPSGLTPGI QTLGGLSDHG GNQNVSSAFG DRSFSDEQVN RVPGYGNNMG SLHHNSSLLS GIIDAGRSTQ NETQAFSNMF GMNKDANDIN TWNNVPPKNE
1301: GMGRMMSYDA QDRMGKQAVL DSLIQEELPV GTPGQQSSFN ISDRYSDNLV GEDRRKDRLV VPSHGQNSVL LKRPPSSHSS SSHEGLLERM SDTASRAAAS
1401: SYSGIEGGVR RESGAAGNKG STSEAASFSE MLKKSNSMKK VAAESTDATE GSKGGGGKKK GKKGRQIDPA LLGFKVTSNR ILMGEIHRAD DF
0101: LLGARKVDRR KTERRIDSVS SRETGDIKNA AASDRWNDVN SRAAVHEPRR DNKWSSRWGP DDKEKEARCE KVDINKDKEE PQSESQSVVS NVRATSERDS
0201: DTRDKWRPRH RMESQSGGPS SYRAAPGFGL DRGRAEGPNL GFTVGRGRAS TIGRGSSTSL IGAGSALSPV FRYPRGKLLD MYRKQKPDSS LGRILTEMDE
0301: VASITQVALI EPLAFIAPDA EEEANLNGIW KGRIISSEVY TSSGEESLGG NSLLKCRIPE SGETKVDGAL LGFMNGDNGS MKNNDSGLLG SHNGGLGAAS
0401: SVPRLNSVAS ESYGSGGAGY QLSHGSPEAV RSVFTKSSVL DGSESVVGSF EQAYTGKLQQ PDTEVDHSEG AMPPEEFLFL YIDPQGVIQG PFIGSDIISW
0501: FEQGFFGTDL QVRLASAPEG TPFQDLGRVM SYIKAESVHA HISDQKSELE ETSLKANSEA GGSVAHVAES NDSSSLTGIS RSFSVYNNPS GQDNFQRKSE
0601: SEVYGRPPHA EDQSFLDFSA QDEEIVFPGR ARVSGYASSV KSSTSMHDAL MEFSGHSDIP VEVTTAATRN QNENKLHPFG VLWSELEGGS TPVNPLPNRS
0701: SGAMGEPSCS IENRPINSRR NSQIDPNISL DALSGNRMSQ FEHESNFFNH GDQLPSNQHH QQHFQNRDML SHLHIGDQDL EHLITLQLQQ QQKIQMQQQQ
0801: KIQLQQQQKI QLQQHQLEQE HQLHQKLLQE QQQSHARQLH FQQILQGQTP DTRFGQSHDF PRSNSVDQML LEQQMLNELQ KSSGHPSQNF APYIEQHAAG
0901: NFGRFTHEGH QRELLEQLFS TQMQSQYGQK QSQYGQMQSQ HGQLQSEPIR SLEYQLLQQE QLMQLANGVR HNTLLEEQRH IDPLWPSDHS DQLLRTHPGI
1001: HRSHSSAGFR PLDFHQQQQR PHFEDQFSQL ERNRSYQQQL RLELLEHGLP FERSASGLNL DAVNGLGLSQ GLELRDATAH MQSSGRLGNS TPGFSHQNPR
1101: IPLGESHFSH LEPTEGRWSG ADTQLAGDWA ESQFRRSNMD TEHDKMRSEI RRLGEDPNSW MVGGSTDDKS KQLFMELLHQ RPGHQSAESP NMNRGYPYDR
1201: MVPSGLTPGI QTLGGLSDHG GNQNVSSAFG DRSFSDEQVN RVPGYGNNMG SLHHNSSLLS GIIDAGRSTQ NETQAFSNMF GMNKDANDIN TWNNVPPKNE
1301: GMGRMMSYDA QDRMGKQAVL DSLIQEELPV GTPGQQSSFN ISDRYSDNLV GEDRRKDRLV VPSHGQNSVL LKRPPSSHSS SSHEGLLERM SDTASRAAAS
1401: SYSGIEGGVR RESGAAGNKG STSEAASFSE MLKKSNSMKK VAAESTDATE GSKGGGGKKK GKKGRQIDPA LLGFKVTSNR ILMGEIHRAD DF
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.