Subcellular Localization
min:
: max
Winner_takes_all: extracellular
Predictor Summary:
Predictor Summary:
- extracellular 8
- endoplasmic reticulum 5
- vacuole 5
- plasma membrane 5
- golgi 5
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| AT2G20208.1 | Thale cress | extracellular | 67.09 | 63.1 |
| Bra036691.1-P | Field mustard | extracellular | 82.28 | 60.75 |
| CDX89668 | Canola | extracellular | 48.1 | 55.07 |
| CDY69877 | Canola | extracellular | 48.1 | 55.07 |
| CDY70383 | Canola | extracellular | 46.84 | 50.68 |
| CDY16331 | Canola | extracellular | 48.1 | 49.35 |
| CDX89666 | Canola | extracellular | 44.3 | 47.95 |
| CDX91571 | Canola | extracellular | 45.57 | 46.75 |
| CDY43552 | Canola | extracellular | 45.57 | 46.15 |
| CDX80652 | Canola | extracellular | 43.04 | 45.33 |
| CDX91173 | Canola | extracellular | 41.77 | 44.59 |
| CDY02283 | Canola | extracellular | 43.04 | 42.5 |
| CDY69362 | Canola | extracellular | 41.77 | 42.31 |
| CDX83792 | Canola | extracellular | 44.3 | 40.23 |
| CDX96684 | Canola | extracellular | 44.3 | 40.23 |
| CDX83795 | Canola | extracellular | 43.04 | 39.08 |
Protein Annotations
| EnsemblPlants:CDY39762 | EnsemblPlantsGene:GSBRNA2T00068557001 | PANTHER:PTHR36788 | PFAM:PD629468 | ProteinID:CDY39762 | ProteinID:CDY39762.1 |
| SignalP:SignalP-noTM | TMHMM:TMhelix | UniParc:UPI0004EDDA12 | UniProt:A0A078HPI0 | MapMan:35.1 | : |
Description
BnaA09g10140DDefensin-like protein 172 [Source:Projected from Arabidopsis thaliana (AT2G20208) UniProtKB/Swiss-Prot;Acc:P82774]
Coordinates
chrLK032457:+:39871..40618
Molecular Weight (calculated)
8365.5 Da
IEP (calculated)
7.970
GRAVY (calculated)
0.368
Length
79 amino acids
Sequence
(BLAST)
(BLAST)
1: MAKTTSTLVL PIIFLIMFAL VEQNVGCTAS MGPCEIGKSC TTKCKVTFGQ MANGYCDRST GGLGECVCVY PCPPPKTHL
1: MAKASSTLVL SIIFLVMFAL VEQNMGCTAT MGPCEKDKSC SATCRATFGD RANGFCDYST STSPGGECTC VYHCPPVVPH ESHL
Arabidopsis Description
LCR60Defensin-like protein 172 [Source:UniProtKB/Swiss-Prot;Acc:P82774]
SUBAcon: [extracellular]
SUBAcon: [extracellular]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.